Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0890
(497 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 151 6e-38
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 149 3e-37
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 95 5e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 66 4e-12
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 4.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 8.4
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 151 bits (366), Expect = 6e-38
Identities = 63/84 (75%), Positives = 77/84 (91%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
G GK+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD
Sbjct: 57 GQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVD 116
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
V D+IR++AD C+GLQGFL+FHS
Sbjct: 117 EVTDKIRRIADNCSGLQGFLVFHS 140
Score = 119 bits (287), Expect = 2e-28
Identities = 51/68 (75%), Positives = 62/68 (91%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERL+++Y KKSKL+F++YPAPQVST VVEPYNS+LTTH TL+ +DC FMVDNE+ YDIC
Sbjct: 154 LERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDIC 213
Query: 474 RRNLDIER 497
RRNLDIER
Sbjct: 214 RRNLDIER 221
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 149 bits (360), Expect = 3e-37
Identities = 60/84 (71%), Positives = 77/84 (91%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
G GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
VL+RIR++AD C+GLQGFL+FHS
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHS 144
Score = 124 bits (300), Expect = 6e-30
Identities = 53/68 (77%), Positives = 63/68 (92%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERL+++YGKKS L+F++YPAPQVST VVEPYNS+LTTH TL++SDC FMVDNEA YDIC
Sbjct: 158 LERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDIC 217
Query: 474 RRNLDIER 497
RRNLDIER
Sbjct: 218 RRNLDIER 225
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 95.1 bits (226), Expect = 5e-21
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
GK+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D V
Sbjct: 57 GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +R+ A+ C LQGF + HS
Sbjct: 117 LDVVRREAEACDALQGFQLTHS 138
Score = 55.6 bits (128), Expect = 4e-09
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I
Sbjct: 152 LSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIF 211
Query: 474 RRNLDIE 494
L I+
Sbjct: 212 ANTLKIK 218
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 65.7 bits (153), Expect = 4e-12
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 13 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDL 186
+++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 187 VLDRIRKLADQCTGLQGFLIFHS 255
++D I + AD L+GF + HS
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHS 140
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQ-VSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 470
+ERL+ Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I
Sbjct: 154 LERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213
Query: 471 CRRNL 485
L
Sbjct: 214 AADRL 218
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 4.8
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 248 STLRWRYRLWVHFLIDGASL 307
S++ WR+ W+ ++ G SL
Sbjct: 190 SSISWRWEFWILLMLSGVSL 209
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 121 KEDAANNYARGHYTIGKEIVDLV 189
+E ANN+ RGH I K+ D +
Sbjct: 599 RERKANNFFRGHIEIDKKTKDFL 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,913,361
Number of Sequences: 5004
Number of extensions: 36096
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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