Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0890
(497 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 169 1e-42
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 169 1e-42
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 169 1e-42
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 169 1e-42
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 168 2e-42
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 168 2e-42
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 156 7e-39
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 102 1e-22
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 101 4e-22
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 101 4e-22
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 99 8e-22
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 100 1e-21
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 100 1e-21
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 97 4e-21
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 97 4e-21
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 95 2e-20
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 63 9e-11
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 63 1e-10
At2g44990.1 68415.m05602 dioxygenase-related low similarity to c... 29 1.7
At4g10440.1 68417.m01716 dehydration-responsive family protein s... 27 5.3
At1g33170.1 68414.m04096 dehydration-responsive family protein s... 27 5.3
At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P4... 27 7.0
At5g65370.1 68418.m08222 epsin N-terminal homology (ENTH) domain... 27 9.3
At2g17550.1 68415.m02031 expressed protein 27 9.3
At1g64770.1 68414.m07344 expressed protein 27 9.3
At1g06470.2 68414.m00686 phosphate translocator-related low simi... 27 9.3
At1g06470.1 68414.m00685 phosphate translocator-related low simi... 27 9.3
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 169 bits (410), Expect = 1e-42
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
GAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD
Sbjct: 57 GAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVD 116
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
L LDRIRKLAD CTGLQGFL+F++
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNA 140
Score = 116 bits (279), Expect = 9e-27
Identities = 50/68 (73%), Positives = 62/68 (91%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERLSVDYGKKSKL F +YP+PQVST VVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 474 RRNLDIER 497
RR+L+IER
Sbjct: 214 RRSLNIER 221
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 169 bits (410), Expect = 1e-42
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
GAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD
Sbjct: 57 GAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVD 116
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
L LDRIRKLAD CTGLQGFL+F++
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNA 140
Score = 116 bits (279), Expect = 9e-27
Identities = 50/68 (73%), Positives = 62/68 (91%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERLSVDYGKKSKL F +YP+PQVST VVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 474 RRNLDIER 497
RR+L+IER
Sbjct: 214 RRSLNIER 221
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 169 bits (410), Expect = 1e-42
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
GAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD
Sbjct: 57 GAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVD 116
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
L LDRIRKLAD CTGLQGFL+F++
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNA 140
Score = 116 bits (278), Expect = 1e-26
Identities = 50/68 (73%), Positives = 61/68 (89%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERLSVDYGKKSKL F +YP+PQVST VVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 474 RRNLDIER 497
RR+L IER
Sbjct: 214 RRSLSIER 221
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 169 bits (410), Expect = 1e-42
Identities = 76/84 (90%), Positives = 82/84 (97%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
GAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD
Sbjct: 57 GAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVD 116
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
L LDRIRKLAD CTGLQGFL+F++
Sbjct: 117 LCLDRIRKLADNCTGLQGFLVFNA 140
Score = 116 bits (278), Expect = 1e-26
Identities = 50/68 (73%), Positives = 61/68 (89%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERLSVDYGKKSKL F +YP+PQVST VVEPYNS+L+TH+ LEH+D + ++DNEAIYDIC
Sbjct: 154 LERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDIC 213
Query: 474 RRNLDIER 497
RR+L IER
Sbjct: 214 RRSLSIER 221
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 168 bits (408), Expect = 2e-42
Identities = 74/84 (88%), Positives = 82/84 (97%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
GAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD
Sbjct: 57 GAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVD 116
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
L LDR+RKLAD CTGLQGFL+F++
Sbjct: 117 LCLDRVRKLADNCTGLQGFLVFNA 140
Score = 118 bits (285), Expect = 2e-27
Identities = 53/68 (77%), Positives = 62/68 (91%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERLSVDYGKKSKL F IYP+PQVST VVEPYNS+L+TH+ LEH+D A ++DNEAIYDIC
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 474 RRNLDIER 497
RR+LDIER
Sbjct: 214 RRSLDIER 221
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 168 bits (408), Expect = 2e-42
Identities = 74/84 (88%), Positives = 82/84 (97%)
Frame = +1
Query: 4 GAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVD 183
GAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVD
Sbjct: 57 GAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVD 116
Query: 184 LVLDRIRKLADQCTGLQGFLIFHS 255
L LDR+RKLAD CTGLQGFL+F++
Sbjct: 117 LCLDRVRKLADNCTGLQGFLVFNA 140
Score = 118 bits (285), Expect = 2e-27
Identities = 53/68 (77%), Positives = 62/68 (91%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERLSVDYGKKSKL F IYP+PQVST VVEPYNS+L+TH+ LEH+D A ++DNEAIYDIC
Sbjct: 154 LERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213
Query: 474 RRNLDIER 497
RR+LDIER
Sbjct: 214 RRSLDIER 221
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 156 bits (379), Expect = 7e-39
Identities = 67/83 (80%), Positives = 80/83 (96%)
Frame = +1
Query: 7 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 186
+G+HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+G+EIVD
Sbjct: 58 SGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDT 117
Query: 187 VLDRIRKLADQCTGLQGFLIFHS 255
L+R+RKLAD CTGLQGFL+F++
Sbjct: 118 CLERLRKLADNCTGLQGFLVFNA 140
Score = 115 bits (277), Expect = 2e-26
Identities = 51/68 (75%), Positives = 61/68 (89%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ERLSVD+GKKSKL F IYP+PQVST VVEPYNS+L+TH+ LEH+D ++DNEAIYDIC
Sbjct: 154 LERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDIC 213
Query: 474 RRNLDIER 497
RR+LDIER
Sbjct: 214 RRSLDIER 221
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 102 bits (245), Expect = 1e-22
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHS 138
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/66 (40%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 474 RRNLDI 491
R L +
Sbjct: 212 FRTLKL 217
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 101 bits (241), Expect = 4e-22
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHS 138
Score = 66.9 bits (156), Expect = 7e-12
Identities = 26/66 (39%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 474 RRNLDI 491
R L +
Sbjct: 212 FRTLKL 217
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 101 bits (241), Expect = 4e-22
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHS 139
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/66 (40%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 212
Query: 474 RRNLDI 491
R L +
Sbjct: 213 FRTLKL 218
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 99 bits (238), Expect = 8e-22
Identities = 43/82 (52%), Positives = 58/82 (70%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
G+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHS 138
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/66 (40%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 474 RRNLDI 491
R L +
Sbjct: 212 FRTLKL 217
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 99.5 bits (237), Expect = 1e-21
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHS 138
Score = 66.9 bits (156), Expect = 7e-12
Identities = 26/66 (39%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 474 RRNLDI 491
R L +
Sbjct: 212 FRTLKL 217
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 99.5 bits (237), Expect = 1e-21
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
G++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHS 139
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/66 (40%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 153 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 212
Query: 474 RRNLDI 491
R L +
Sbjct: 213 FRTLKL 218
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHS 138
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/66 (40%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 474 RRNLDI 491
R L +
Sbjct: 212 FRTLKL 217
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/82 (51%), Positives = 57/82 (69%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ C LQGF + HS
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHS 138
Score = 67.7 bits (158), Expect = 4e-12
Identities = 27/66 (40%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 152 ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 474 RRNLDI 491
R L +
Sbjct: 212 FRTLKL 217
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/82 (50%), Positives = 58/82 (70%)
Frame = +1
Query: 10 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 189
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
LD +RK A+ LQGF + HS
Sbjct: 117 LDVVRKEAENSDCLQGFQVCHS 138
Score = 66.9 bits (156), Expect = 7e-12
Identities = 26/66 (39%), Positives = 46/66 (69%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 473
+ ++ +Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC
Sbjct: 152 ISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211
Query: 474 RRNLDI 491
R L +
Sbjct: 212 FRTLKL 217
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 63.3 bits (147), Expect = 9e-11
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLV 189
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
+D I + AD L+GF++ HS
Sbjct: 119 MDMIDREADGSDSLEGFVLCHS 140
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVV-EPYNSILTTHTTLEHSDCAFMVDNEAIYDI 470
+E L+ Y KK ++++P ++DVV +PYNS+LT ++DC ++DN A+ I
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRI 213
Query: 471 CRRNLDI 491
L +
Sbjct: 214 AVERLHL 220
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/82 (35%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +1
Query: 16 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLV 189
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 190 LDRIRKLADQCTGLQGFLIFHS 255
+D I + AD L+GF++ HS
Sbjct: 119 MDMIDREADGSDSLEGFVLCHS 140
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 294 MERLSVDYGKKSKLEFAIYPAPQVSTDVV-EPYNSILTTHTTLEHSDCAFMVDNEAIYDI 470
+E L+ Y KK ++++P ++DVV +PYNS+LT ++DC ++DN A+ I
Sbjct: 154 LETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRI 213
Query: 471 CRRNLDI 491
L +
Sbjct: 214 AVERLHL 220
>At2g44990.1 68415.m05602 dioxygenase-related low similarity to
carotenoid cleavage dioxygenase 1 [Arabidopsis thaliana]
GI:3096910; contains Pfam profile PF03055: Retinal
pigment epithelial membrane protein
Length = 618
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1
Query: 238 FLIFHSSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTP 354
+++F + V++ +GS+ +SP+ +A SLN S+ S+P
Sbjct: 328 YILFANRVKLNPIGSIAAMCGMSPMVSALSLNPSNESSP 366
>At4g10440.1 68417.m01716 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 27.5 bits (58), Expect = 5.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -2
Query: 205 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 116
C P PN + PF+W ++ + ++P++
Sbjct: 136 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 165
>At1g33170.1 68414.m04096 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 639
Score = 27.5 bits (58), Expect = 5.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -2
Query: 205 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 116
C P PN + PF+W ++ + ++P++
Sbjct: 153 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 182
>At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P450
77A3p, Glycine max., PIR:T05948
Length = 512
Score = 27.1 bits (57), Expect = 7.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 7 AGKHVPRAVFVDLE-PTVVDEVRTGTYRQLFHPEQLITGKEDA 132
AG +P V V++ P + ++ R + F P++ + GKEDA
Sbjct: 394 AGYDIPAGVNVEVYLPGISEDPRIWNNPKKFDPDRFMLGKEDA 436
>At5g65370.1 68418.m08222 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to clathrin
assembly protein AP180 (GI:6492344) [Xenopus laevis]
Length = 295
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 166 GKEIVDLVLDRIRKLADQCTGLQGFLIFHSSVE 264
G + VD +L R+R D C + ++ H V+
Sbjct: 67 GPDTVDAILHRLRVTTDVCVAAKCLILLHKMVK 99
>At2g17550.1 68415.m02031 expressed protein
Length = 765
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 323 LAVVNGETLHQ*GSEPRAGTSTEEWKIRNPCRPVHWSASLRILSK 189
L V N T H +P G EEW R+ C P+ S +I+ +
Sbjct: 39 LQVDNFHTYHNGKDKPSNGFEEEEWYERS-CYPIEESMKKKIIEE 82
>At1g64770.1 68414.m07344 expressed protein
Length = 348
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 217 GQRACGFCPKPNLRFPFQWCS 155
G + C +CP P L PF+ S
Sbjct: 197 GLKGCSYCPNPPLSSPFELLS 217
>At1g06470.2 68414.m00686 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 72 HWHIQTVVSSRTTYYW*GR 128
H+ IQ V+S T+YW GR
Sbjct: 114 HFSIQAVLSKMITWYWSGR 132
>At1g06470.1 68414.m00685 phosphate translocator-related low
similarity to SP|P52178 Triose phosphate/phosphate
translocator, non-green plastid, chloroplast precursor
(CTPT) {Brassica oleracea},
phosphoenolpyruvate/phosphate translocator precursor
[Mesembryanthemum crystallinum] GI:9295275
Length = 414
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 72 HWHIQTVVSSRTTYYW*GR 128
H+ IQ V+S T+YW GR
Sbjct: 114 HFSIQAVLSKMITWYWSGR 132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,395,035
Number of Sequences: 28952
Number of extensions: 204074
Number of successful extensions: 644
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -