Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0888
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    33   0.22 
U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 13/50 (26%), Positives = 29/50 (58%)
 Frame = +1

Query: 184 LNGLLEDYATELMNRLIDNLKLEAHVYLENVTTETAMEEIAKFSTASTNC 333
           ++ L+ D+  +L+ +  +NL++  H+  EN      ++ I + +T+ST C
Sbjct: 113 ISRLIGDFRQKLLEKSTENLEVRDHLVTENDAIHEIIDRILEKNTSSTTC 162


>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 118 NSKISLSRSLFFNRMDTMIYNYLNGLLEDYATELMNRLIDN 240
           N +  +  + FF  +   +  Y N L  DY +E+   +IDN
Sbjct: 15  NYQFKIKNARFFGTIIKFLCIYFNKLGNDYTSEIARLIIDN 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,808,190
Number of Sequences: 27780
Number of extensions: 192544
Number of successful extensions: 577
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)