Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0887
         (567 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   5.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.3  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   7.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   9.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 281  DKLSRARPGHRPL*RKSLRFIAVKAHSVTTKLS 379
            D L+    G +P+   + +FI V ++S+T  LS
Sbjct: 1480 DTLNPRTRGEKPIVPSAEKFIEVSSNSITLHLS 1512


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 220 VPCHLYILPWLKG*DVR 170
           +P H++I PW+   D R
Sbjct: 539 IPIHVWIHPWIPLLDTR 555


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 72  FTVEANR*VRISFEKLIPACGIRTPVHC 155
           +    N  + +S   LI ACG+R    C
Sbjct: 408 YAFPVNLTIPVSISLLIAACGLRNGDPC 435


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 72  FTVEANR*VRISFEKLIPACGIRTPVHC 155
           +    N  + +S   LI ACG+R    C
Sbjct: 408 YAFPVNLTIPVSISLLIAACGLRNGDPC 435


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 72  FTVEANR*VRISFEKLIPACGIRTPVHC 155
           +    N  + +S   LI ACG+R    C
Sbjct: 408 YAFPVNLTIPVSISLLIAACGLRNGDPC 435


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 72  FTVEANR*VRISFEKLIPACGIRTPVHC 155
           +    N  + +S   LI ACG+R    C
Sbjct: 408 YAFPVNLTIPVSISLLIAACGLRNGDPC 435


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 156 SNAPVFESRRRVSI 115
           SN P+ E RRR  I
Sbjct: 37  SNKPIMEKRRRARI 50


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 170 PDVLSFKPRQYIEMTRDLLF 229
           PDV   K  Q +EM R+ ++
Sbjct: 324 PDVRGIKSVQEVEMLREKIY 343


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,785
Number of Sequences: 336
Number of extensions: 2492
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)