Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0887
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    29   0.36 
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    28   1.1  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   5.9  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   5.9  
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   7.7  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   7.7  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 274 NFRQAVACSPGSSTIVTQELEVYSCQSAFRDHEAFVNSXLIRLKGRFLIMAVYVLPCFCR 453
           N    V CS    T ++     +   S ++  +  + S LI + G FLI ++Y +  +CR
Sbjct: 256 NKTHVVVCSTDDLTAISS----FILSSIYKIRKVVIISLLIIIAGLFLISSIYEIWKWCR 311

Query: 454 LR 459
           +R
Sbjct: 312 IR 313


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +2

Query: 83  SQSLSAYFIRKIDTRLRDSNTGALLDTNAPDVLSFKPRQYIEMTRDLLFNHFVYHKMVKL 262
           +Q L+++ +  I +   DSN G +  +N   +  +KP+    +    L +H+V     KL
Sbjct: 20  AQKLTSWGLLNIRSIHADSNRGVVNSSNLIIIPPYKPKSKSVLRSPYLTSHYVDALAFKL 79

Query: 263 RFDP 274
             DP
Sbjct: 80  VEDP 83


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +1

Query: 289 VACSPGSSTIVTQELEVYSCQSAFRDHEAFV-NSXLIRLKGRFLIMAVYVL 438
           V C P    I+ ++ +   CQ+   DH  +V  S   R +   L  A Y L
Sbjct: 340 VHCDPHPGNILVRKNQAGLCQTVILDHGLYVFESEKFRKEFALLFTAAYSL 390


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 453 LESSKYLNWFSCHPTYCMSGTGSITGXSHLKFYL 554
           L SS+ L WFS    + ++G+G       + FYL
Sbjct: 48  LLSSETLGWFSVICAFSITGSGLEVNTMSIPFYL 81


>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 268

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 308 DPGEHATACRKLDQNVT*PFCDKRND 231
           D  +++  CR +DQ++T P C +  D
Sbjct: 40  DQFDYSCICRWMDQSLTCPICKRHVD 65


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 261 YVLIQFSTSCRVLARVIDHCNA 326
           +VL      CRV+ R I+HC++
Sbjct: 547 HVLSAHPYGCRVIQRAIEHCHS 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,912
Number of Sequences: 5004
Number of extensions: 44245
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)