Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0887
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.23 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.93 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 22  NTI*RFMIDFYYTMLXPSPWKPIVKCVF 105
           N +  F+I    T   P  WKP+ KC F
Sbjct: 402 NVVAPFLIGSRRTSPPPEDWKPLDKCYF 429


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 281  DKLSRARPGHRPL*RKSLRFIAVKAHSVTTKLS 379
            D L+    G +P+  ++ RFI V  +S+T  L+
Sbjct: 1450 DMLNTRTKGSKPIIPEAARFIEVATNSITLHLN 1482


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 220 VPCHLYILPWL 188
           VP H +I PWL
Sbjct: 537 VPIHTWIHPWL 547


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 165 FVSSNAPVFESRRRVSIFRMKYALND 88
           FV SN PV +    V   RM+  +ND
Sbjct: 364 FVGSNKPVKDEYMLVLSNRMQKIVND 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,319
Number of Sequences: 438
Number of extensions: 3088
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)