Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0887
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ...    28   5.0  
At5g26617.1 68418.m03178 hypothetical protein                          27   6.6  
At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s...    27   6.6  
At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger) fa...    27   8.7  
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    27   8.7  
At1g02300.1 68414.m00173 cathepsin B-like cysteine protease, put...    27   8.7  

>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
           similar to GI:11993490
          Length = 661

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 372 FVVTECALTAINLKLLRYNGR*PGRARDSLSKI 274
           +V+  C  T++ LK LRYNG  P      + +I
Sbjct: 123 YVIDACHNTSLRLKKLRYNGNEPFNGNSVVKEI 155


>At5g26617.1 68418.m03178 hypothetical protein
          Length = 142

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 219 TSCLIISFITKWL-SYVLIQFSTSCRVLARVIDHCNARA 332
           T  LI++    W+  Y L+QF   C VL   I+  ++R+
Sbjct: 70  TKALIVAMQQVWIRGYKLVQFEGGCEVLINAINGKSSRS 108


>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 537

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 387 RINESFVVTECALTAINLKLLRYNGR*PGR 298
           R+NE +VVTE     +N KLL  NGR P R
Sbjct: 461 RVNE-WVVTEKLGDTLNTKLLPQNGRLPKR 489


>At5g19430.1 68418.m02315 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 402 EGSFPNHGCLCTAVL--LPLESSKYLNWFSCHPTYCMS 509
           E SF NHG  C   L  +PL+ +  +    C  TYC++
Sbjct: 36  EPSFGNHGGCCAICLSEIPLQETAMVK--GCEHTYCVT 71


>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 216 GTSCLIISFITKWLSYVLIQFSTSCRVLARVI 311
           G +C+ ++F+T WL  ++I F  +  ++  V+
Sbjct: 410 GLACMTLAFVTTWLMPLIINFVWNRNIVFSVL 441


>At1g02300.1 68414.m00173 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]
          Length = 379

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 233 HFVYHKMVKLRFDPIFDKLSRARPGHRP 316
           +F YH +V    DP FD    + PG  P
Sbjct: 202 YFKYHGVVTQECDPYFDNTGCSHPGCEP 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,701,249
Number of Sequences: 28952
Number of extensions: 230781
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)