Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0883
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   1.5  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   1.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   4.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   4.5  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -2

Query: 374 LILGLPPSLTTSKGQCFMSACTVASXELTSDETFGIEXCV 255
           ++LGL P     + Q  M  C   S     ++ + +  CV
Sbjct: 94  IMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCV 133


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -2

Query: 374 LILGLPPSLTTSKGQCFMSACTVASXELTSDETFGIEXCV 255
           ++LGL P     + Q  M  C   S     ++ + +  CV
Sbjct: 94  IMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCV 133


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 183 YVAFTDTERLIGDAAXXQVAMIPXNTXFDAKRLIGRKFARC 305
           Y+  TD +  + D+    +     N   + K L  +KF+RC
Sbjct: 80  YLNDTDMDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSRC 120


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 66 PFCIFNQSCYLFLKQ 22
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,965
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)