Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0882
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    29   0.59 
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    29   0.78 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   1.8  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.1  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    26   4.2  
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   4.2  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   5.5  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   7.3  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   7.3  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   7.3  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   9.6  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   9.6  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   9.6  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   9.6  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 550 GSVREFYEAIPHSQLSAKTGTSLWNYRSKFT 642
           G +  FY      +L+A TGT++WNY +  T
Sbjct: 168 GDLLVFYRGSEGIELAACTGTNVWNYSNVLT 198


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
 Frame = +2

Query: 293 ASRNEDLSPLHWRVLASNTGSIR--NNWTVGSNI-GQKNTHSLKGRSS 427
           AS +E+L+P   + LASNT  ++  N+ +  S+I G + T++L G+S+
Sbjct: 196 ASTSENLTPTSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKST 243


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 370 DSWLKYWAEEYPFAERQKFLNQY 438
           ++W  YW   YPF +  K   +Y
Sbjct: 39  ENWKSYWKSHYPFVKNDKGKKKY 61


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 245 PFETLSVKRW*KNLKNASRNEDLSPLHWRVLASN-TGS-IR----NNWTVGSNIGQKNTH 406
           P ET+SV R    L+ +S   ++ P   R   S+ TGS IR    N W+ GS+  +K+  
Sbjct: 454 PTETISVVR----LRRSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKSAQ 509

Query: 407 SLKGRSSLTN 436
                SSL N
Sbjct: 510 RSVSMSSLNN 519


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 655 KAITR*TWSDNSRAKXLSLLTAVNEEWLRRTP*RSPAI 542
           K++   T SD  +   LS   +VN E+L+ TP   PA+
Sbjct: 29  KSLDNATLSDLVQKPELSKNLSVNNEFLKETPLNQPAL 66


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = -1

Query: 381 EPTVQLFRIEPVFEANTLQWRGERSSFLDAFFKFFY--HRFTESVSKGLMLVSCFC 220
           +P  Q   I PVF    +   G    FLDAF   +Y      +  S   + V CFC
Sbjct: 336 DPVRQDIPIPPVFSHYVMNLPGSAIEFLDAFKGCYYGLEYLFKDRSLPKVHVHCFC 391


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 474 NIQTLDISLEMRILVKELLPF-SEWVFFCPIFEPTVQ 367
           N+QTLD+SL    L+K+   + +++  +    EPT+Q
Sbjct: 98  NLQTLDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQ 134


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 96  FFLSPCRC*CWRPYHCTS 149
           FFL   R  CWR YH T+
Sbjct: 559 FFLRKMRRKCWRVYHFTA 576


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 121 SAGVHTIVPPRSEESTADA*ARPGGVVG 204
           SA   T++PPR+E +   A  +P G  G
Sbjct: 118 SANSSTVLPPRTENALHAASPKPSGSTG 145


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 462 GFEYSLHEDYSQRSLKR*NSTTSVTPRMAG 551
           G  Y L EDY+  + +   STT  T R AG
Sbjct: 118 GSSYQLKEDYTLDNFRLAASTTEHTARRAG 147


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 616 LWNYRSKFTWLWL 654
           LW+ R   TWLWL
Sbjct: 291 LWDVRKPATWLWL 303


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 634 WSDNSRAKXLSLLTAVNEEWLR 569
           W  N +A   S+ TA+ EEWLR
Sbjct: 253 WRSNGKA---SMTTAIMEEWLR 271


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 212 ELKQKQDTSIKPFETLSVKRW*KNLKNASRNEDLSP 319
           E+KQK+  S  P E++  K   K   + + NE++SP
Sbjct: 110 EIKQKRSLSESPQESMLEKVSKKPKVSEAHNEEISP 145


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 391 AEEYPFAERQKFLNQYPHFKTNIQGLNIHFMRITP 495
           A ++P+A+R   L   P F + I G  I+  +  P
Sbjct: 581 ANDHPYAQRVFSLTCAPQFFSYINGYQIYLQQTNP 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,319
Number of Sequences: 5004
Number of extensions: 62032
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)