Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0882
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1558 - 27722852-27722963,27723191-27723240,27723338-277234... 28 5.7
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 28 5.7
04_03_0132 - 11647230-11647432,11647520-11647982,11648159-116482... 28 5.7
02_03_0134 - 15596379-15597689 28 5.7
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 28 7.5
07_03_1151 + 24385272-24386543 27 9.9
04_03_0448 - 16020773-16021066,16023040-16023291,16023470-160236... 27 9.9
04_03_0046 + 10114402-10114535,10116438-10117365 27 9.9
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 27 9.9
01_04_0054 - 15456668-15459691 27 9.9
>07_03_1558 -
27722852-27722963,27723191-27723240,27723338-27723406,
27723507-27723571,27724058-27724145,27724294-27724362
Length = 150
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 290 NASRNEDLSPLHWRVLASNTGSIRNNWTVGSNIGQKNTH 406
NA+ +E +PLHW L + I+ G+++ N+H
Sbjct: 77 NATNSEKNTPLHWACLNGHIEVIKALICAGASVSALNSH 115
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 229 GYQH-QTLRDTFSETMVKELKERIKKRRPFAPPLEG 333
GYQH +T T +E ++E K I++RR F +G
Sbjct: 550 GYQHHETESSTEAEQRIREYKRIIRRRRHFQVSTQG 585
>04_03_0132 -
11647230-11647432,11647520-11647982,11648159-11648271,
11648956-11649412
Length = 411
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 376 WLKYWAEEYPFAERQKFLNQYPHF 447
W KY+ + +A R FL YPHF
Sbjct: 344 WGKYFLVDSGYASRYGFLPSYPHF 367
>02_03_0134 - 15596379-15597689
Length = 436
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -2
Query: 200 TTPPGRA*ASAVDSSERGGTMVWTPALTAARR*KEDV 90
T P D S GG+ VW PALTA R +D+
Sbjct: 96 TAKPANTTKGKADKS--GGSSVWPPALTARNRSSKDM 130
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 622 SRAKXLSLLTAVNEEWLRRTP*RSPAIRGVTEV 524
+++K LS +TA N +W R RS A+RG TEV
Sbjct: 416 AQSKKLSQMTADNAQWEDRQLLRSGAVRG-TEV 447
>07_03_1151 + 24385272-24386543
Length = 423
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 223 ETGYQHQTLR-DTFSETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKY 387
+TG ++ +TF + K+ K K+ P P G G YG+NS + + L+Y
Sbjct: 202 DTGVWRSPVKAETFEKPEQKKKKATAKQPPPLPLPRNGYG--YGYNSDEDSALLQY 255
>04_03_0448 -
16020773-16021066,16023040-16023291,16023470-16023605,
16023713-16023937,16024467-16024851,16025142-16025421
Length = 523
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 522 YYFNVLGTFGSNPHEVNIQTLDISLEMRILVKELLPFSEW 403
Y F G NP + + LD +L R+ +KEL S W
Sbjct: 184 YMFEYGREDGHNPVILELAKLDFNLLQRVHLKELKEISRW 223
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 427 LNQYPHFKTNIQGLNIHFMRITPKGP*NVEIVP 525
+N Y + KT+I+GL HF + P GP + VP
Sbjct: 154 INPY-YGKTSIEGLISHFEAVLPMGPTIIYNVP 185
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 326 NGGAKGLRFLMRSLSSFTIVSLKVSRR 246
N AKGLR +RSLS SLKVSRR
Sbjct: 237 NSSAKGLR--LRSLSPLHGSSLKVSRR 261
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 70 LIVHQDVTSSFYRLAAVSAGVHTIVPPRSEEST 168
++ QDV S F AA SAG H VP + + ST
Sbjct: 262 MLNEQDVPSVFSSSAAKSAGQHCDVPKQEDCST 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,178,652
Number of Sequences: 37544
Number of extensions: 421648
Number of successful extensions: 1193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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