Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0882
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              31   0.62 
SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)                 29   3.3  
SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31)               28   7.7  
SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)           28   7.7  
SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 66  VLNSASRCHVFFLSPCRC*CWRPYHCTSSF*RVHRRCLSSTWRSGGDR 209
           V +S+  C +   S   C    P HC+ +  RVH RCL   W S  ++
Sbjct: 100 VSSSSDSCRICRDSTAGCDVISPCHCSGTLGRVHVRCLEE-WLSASNK 146


>SB_20050| Best HMM Match : RVT_1 (HMM E-Value=1.3e-07)
          Length = 493

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 102 LSPCRC*CWRPYHCTSSF*RVHRRCLSSTWRSGGDRPNLSRNRIPASNPSRH 257
           LSP    C R  + T S  ++ RR L+ TW++  D  N   + +P  +  RH
Sbjct: 229 LSPLNKYCQRETYATESPFQLARRILNDTWKTVTDAWN-GYHSVPLRSSDRH 279


>SB_46414| Best HMM Match : Extensin_2 (HMM E-Value=0.31)
          Length = 469

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +1

Query: 439 PHFKTNIQGL---NIHFMRITPKGP*NVEIVPLLLLHGWPGSVREFYEAIPHSQLSA 600
           P +K  +Q L    IH  R  P     V+++PLL +H  PG    F +AI H Q  A
Sbjct: 178 PFWKLTVQVLPLLEIHSPRYYPSWKSTVQVLPLLEIHS-PGI--GFLDAILHDQAPA 231


>SB_36835| Best HMM Match : AMP-binding (HMM E-Value=6.2e-13)
          Length = 874

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +1

Query: 229 GYQHQTLRDTFSETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPF 408
           G+Q   + D F E +   LKE IK +      +  +  ++G+ + +L   +KY   + P 
Sbjct: 739 GFQVSAIHDRF-EYITDRLKELIKYK---GFQVSAIHDRFGYITDRLKELIKYKGFQVPP 794

Query: 409 AERQKFLNQYP 441
           AE +  L  +P
Sbjct: 795 AELEALLLSHP 805


>SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 522 YYFNV-LGTFGSNPHEVNIQTLDISLEMRILVKEL 421
           Y++N+      +NP  V ++  D++L MR LV++L
Sbjct: 740 YFYNIEKAKDNTNPSHVGVELTDLTLRMRDLVEKL 774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,445,732
Number of Sequences: 59808
Number of extensions: 445973
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)