Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0882
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    95   5e-20
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    67   1e-11
AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    30   1.7  
AC024790-12|AAL32248.2|   97|Caenorhabditis elegans Hypothetical...    29   2.9  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 46/108 (42%), Positives = 69/108 (63%), Gaps = 2/108 (1%)
 Frame = +1

Query: 265 ETMVKELKERIKKRRPFAPPLEGVG-FKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYP 441
           ++++ +LK R++  R     LE    F YGFNSKQL     YW  +Y + +++  +NQ+P
Sbjct: 58  QSVIDDLKHRLQNARISHSVLEDSDDFYYGFNSKQLLKLRDYWLNKYDWRKQEATINQFP 117

Query: 442 HFKTNIQGLNIHFMRI-TPKGP*NVEIVPLLLLHGWPGSVREFYEAIP 582
            FKT I+GL +HF+ +  PK   NV+  P+L+ HGWPG+V EFY+ IP
Sbjct: 118 QFKTEIEGLQVHFLHVKPPKSYKNVK--PILVAHGWPGNVFEFYKFIP 163


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
 Frame = +1

Query: 265 ETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPH 444
           E+ V   KE+++  R F P L    +    N       LK     + + + Q FLN +  
Sbjct: 60  ESEVSNFKEKLESER-FLPTLYDTNYDNYLNE------LKQVLLGFNWKQHQHFLNTFKQ 112

Query: 445 FKTNIQGLNIHFMRI-TPKGP*NVEIVPLLLLHGWPGSVREFYEAIP 582
           +KT I+GL IHF+R+ TP       +VPLL+ HG+PGS  +F++ IP
Sbjct: 113 YKTEIEGLKIHFLRVSTPPKDKKSRVVPLLIFHGFPGSFWDFFKIIP 159


>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 322 PLEGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFK 450
           P EG G +  F  +Q      ++ E Y F   +  +NQ+ HFK
Sbjct: 175 PTEGDGIEDLFQLEQFQKSRDFYMESYAFDTTKTSINQFFHFK 217


>AC024790-12|AAL32248.2|   97|Caenorhabditis elegans Hypothetical
           protein Y47D7A.15 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 282 T*RTHQ-ETKTFRPSIGGCWLQIRVQFETIGQLAQILGRRIP 404
           T R H  +T  F+P  G C +Q++ +  +  QLAQ LG RIP
Sbjct: 9   TDRDHSLKTMKFKPLRGACDIQMKKKRRS-RQLAQFLGIRIP 49


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 328 EGVGFKYGFNSKQLDSWLKYWAEEYPFAERQKFLNQYPHFKTNI 459
           +GV     + ++ ++  +  W+E  P A+  KF N+  H++T +
Sbjct: 303 QGVKALERYETENMNEEVTDWSEPKPLAKFYKFFNKTLHYETTV 346


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical protein
            ZK593.5 protein.
          Length = 1326

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 262  SETMVKELKERIKKRRPFAPPLEGVGFKYGFNSKQLDSWLKYWAEEYPF 408
            +E MV+E++    KR  F   L  V      N +    W   W EEYPF
Sbjct: 1255 TEKMVEEMEIFNVKREQFFDKLNSV------NRRLRRVWFDAWGEEYPF 1297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,887,374
Number of Sequences: 27780
Number of extensions: 344712
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)