Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0882
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive eff...    29   2.1  
At3g18870.1 68416.m02397 mitochondrial transcription termination...    29   2.7  
At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to GB...    29   3.6  
At4g36980.1 68417.m05240 expressed protein                             28   4.8  
At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP glucosyl...    28   6.3  
At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)...    28   6.3  
At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)...    28   6.3  
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff...    27   8.3  

>At1g65780.1 68414.m07465 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1065

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 200 WGPPELKQKQDTSIKPFETLSVKRW*KNLKNASRNEDLSPLHWRVLASNTGSIR-NNWTV 376
           WGPP   + + TS+  F  L+ K   + L     N  +  +  RVL   +GS++  N+ +
Sbjct: 265 WGPPGTGKTKTTSVLLFTLLNAKC--RTLTCGPTNVSVLEVASRVLKLVSGSLKIGNYGL 322

Query: 377 GSNI--GQKNTHSLKGRSSLTN 436
           G  +  G      +K R  L N
Sbjct: 323 GDVVLFGNDERMKIKDRKDLVN 344


>At3g18870.1 68416.m02397 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 274

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 414 FSEWVFFCP-IFEPTVQLFRIEPVFE 340
           F   VF CP +F PT  + +++PVF+
Sbjct: 82  FPRLVFLCPQLFSPTFDISKLDPVFD 107


>At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to
           GB:CAA73304 from [Arabidopsis thaliana] (Gene 215 (1),
           11-17 (1998)); contains Pfam domain PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain); PMID: 12837945
          Length = 323

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 407 NGYSSAQYLSQLSNCFELNPYLKPTPSNGGAKGLRFLMRSLSSF 276
           N YSS +  SQ++ CF+ NP      S   +   R+L+   S F
Sbjct: 193 NSYSSLEPSSQVTTCFDQNPVFS-VGSESSSDQSRYLVNEDSGF 235


>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +1

Query: 145 PPRSEESTADA*ARPGGVVGTART*AETGYQHQTLRDTFSETMVKELKERIKK 303
           P +S  ST+ A A+   V GT+ +      + +T ++     M K+L ++IKK
Sbjct: 399 PAKSTVSTSTALAKLSKVAGTSSSKQSQAEKKETPQERLKRIMNKQLTKQIKK 451


>At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP
           glucosyltransferase (SUS2) nearly identical to SP|Q00917
           Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana} (SUS2);
           contains Pfam profile: PF00862 sucrose synthase
          Length = 807

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = -2

Query: 407 NGYSSAQYLSQLSNCFE-LNPYL-KPTPSNGGAKGLRFLMRSLSS 279
           NG+++  YL +L   FE  N  L +PT S+    G++FL R LSS
Sbjct: 123 NGHANGDYLLELD--FEPFNATLPRPTRSSSIGNGVQFLNRHLSS 165


>At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 365

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 427 LNQYPHFKTNIQGLNIHFMRITPKGP*NVEIVP 525
           +N Y + KT+I+G+N HF  +   GP  +  VP
Sbjct: 166 INPY-YGKTSIEGMNAHFQTVLHMGPTIIYNVP 197


>At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)
           (DHDPS) (DHPS1) identical to SP|Q9LZX6
           Dihydrodipicolinate synthase 1, chloroplast precursor
           (EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
          Length = 364

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 427 LNQYPHFKTNIQGLNIHFMRITPKGP*NVEIVP 525
           +N Y + KT+I+G+N HF  +   GP  +  VP
Sbjct: 165 INPY-YGKTSIEGMNAHFQTVLHMGPTIIYNVP 196


>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1939

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 158 KSPPPMPKLDLEEWWGPPELKQKQDTSIKPFETLSVKRW*KNLKNASRNEDLSPLHWRVL 337
           K  PP P  +    WGP  +   +D+S+     +S+++   +L  A    D + L   +L
Sbjct: 287 KMNPPCPPFECAHMWGPSLVSSYKDSSLH----ISLRQPAIDLVQAILVSDATALLASLL 342

Query: 338 ASNTG 352
            +NTG
Sbjct: 343 RNNTG 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,179,983
Number of Sequences: 28952
Number of extensions: 332058
Number of successful extensions: 988
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)