Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0881
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   1.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   2.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   2.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.8  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   5.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.7  

>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 266 QFPIQRKCTKQSFVSKSFLQPFFRVYTETQILVKFCANCV 147
           QF + +  T  +FVS  F  PF+       +LV+   + +
Sbjct: 348 QFEMTQNSTNINFVSTFFKIPFYSTLRPINLLVQIILDVI 387


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 289 SQNSNFEHNFLSSENVQN 236
           S N N  H F SSE+ QN
Sbjct: 474 SDNYNSFHQFYSSESSQN 491


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 289 SQNSNFEHNFLSSENVQN 236
           S N N  H F SSE+ QN
Sbjct: 422 SDNYNSFHQFYSSESSQN 439


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -3

Query: 295 DLSQNSNFEHNFLSSENVQNSPL 227
           +  +N++F   FLS +N+Q++ +
Sbjct: 417 ETKRNADFLATFLSEQNIQSTSI 439


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = -1

Query: 225 FEKFFTTFFSRLYG----NTNFGQILRELRQS*LLQYKLFCSYRLYTPKSFYSSCINRKI 58
           F  F+  F  + Y     N    + L E  ++ L    + CS     PK  +    NR+ 
Sbjct: 32  FPNFYNDFEVQRYTWKCENQKCVKYLVEDEETSLATCNMLCSEPAIWPKPVHIKLTNRES 91

Query: 57  SIINRS 40
           SII+++
Sbjct: 92  SIIDKT 97


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 295 DLSQNSNFEHNFLSSENVQNS 233
           D  +N N EHN+  +  + +S
Sbjct: 28  DCDKNQNTEHNYTHNNEMYHS 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,339
Number of Sequences: 336
Number of extensions: 2754
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)