Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0881
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               30   1.4  
SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)       29   2.4  
SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.1  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.6  

>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +3

Query: 75   N*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRNKGLFCTFSL 254
            N  +N  + +VD Y++ C  +        + + N+C  +D +KR  K   N+  +   ++
Sbjct: 1398 NTKENNEDRRVDEYRRKCKSKPGTTKENLDVNANICKNLDKRKRSYKEAMNESAYLEGNV 1457

Query: 255  DRKLCSK 275
              +L S+
Sbjct: 1458 KERLSSE 1464


>SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)
          Length = 182

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 255 DRKLCSKLLFWLKSGGGTKSP 317
           D  LC ++ FWLK+G  TK+P
Sbjct: 120 DTSLCFRVRFWLKAGIRTKAP 140


>SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 302 GNKIASWPTSSETN*SPNDKQKSNDLS 382
           GN++A W T + TN S N+   SN+ S
Sbjct: 5   GNEVAFWGTQNSTNNSNNNDNSSNNNS 31


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 322  PRGDFVPPPDLSQNSNFEHNFLSSENVQNSPL 227
            P     PPP+  Q     H+ LSSE +   PL
Sbjct: 1798 PSPSLPPPPEFLQEDEISHDHLSSELIPPPPL 1829


>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 186 RIDAKKRL*KTFRNKGLFCTFSLDRKLCSKLLFWLKSGGGTKSPLGQLVRKQTDHRTINK 365
           R D +++L  TFRN+G+    SL  +L ++L+  L+         G+  +K TD  ++  
Sbjct: 8   REDLREKLFYTFRNRGVI--DSLKSQLRNRLVLELQQTANINIASGK--KKTTDQTSLYY 63

Query: 366 KATTSVI 386
           +A  S++
Sbjct: 64  QAANSLV 70


>SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 229 LFRKVFYNLFFASIRKHKFWSNSARTASKLTSTIQTFL 116
           +F ++ Y LF+A + KH F   +      + ST+   L
Sbjct: 301 VFERIVYELFYAFLEKHDFLCKNQSGFRSIHSTMTALL 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,053
Number of Sequences: 59808
Number of extensions: 305414
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)