Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0881
         (528 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    29   2.6  
At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein si...    27   5.9  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    27   5.9  
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    27   7.8  
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    27   7.8  

>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 202 KGCKKLFETKDCFVHF-RWIGNCV--QNYCFGLNL 297
           K C+   +  DCF H  RW+ NCV  +NY   ++L
Sbjct: 188 KHCRSCDKCVDCFDHHCRWLNNCVGRKNYMTFISL 222


>At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 549

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 521 CFFGN*STVARIYKVDELTVNFRLADEKFTKTFEDVSKILAIL*FNY*GRCFFVYRSVIS 342
           CF G  S     +++DE+ +  +L+       F+D+     +        CFFVYR V+ 
Sbjct: 387 CFVGFMSKARHNFRLDEVGIRRQLSMVSKIIKFKDIHLYRHLENLEA-EDCFFVYRMVVV 445

Query: 341 LF 336
           LF
Sbjct: 446 LF 447


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
            KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 491  RIYKVDELTVNFRLADEKFTKTFEDVSKILA 399
            R+ +  + T +F+LAD  +TK  E+  K+L+
Sbjct: 1947 RVPQTTKDTASFKLADTDYTKRLENAQKLLS 1977


>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1165

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 403  RILETSSKVFVNFSSANLKFTVSSST 480
            R LE  +    NFS A+L+FTV+S T
Sbjct: 1042 RCLEEKNSDKCNFSEASLEFTVTSDT 1067


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
            [Arabidopsis thaliana] GI:6491702; similar to myosin
            GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
            profiles: PF00063: myosin head (motor domain), PF00612:
            IQ calmodulin-binding motif; identical to cDNA myosin
            (ATM) GI:297068
          Length = 1166

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +3

Query: 267  CSKLLFWLKSGGGTKSPLGQLVRKQTDHRTINKKATTSVIEL*NRKDFGNIFK 425
            CS  + WLKSGG   + LG+++ K +    + ++   +   L  +++  +I +
Sbjct: 930  CSGDIGWLKSGGAKTNELGEVLVKASVLSELQRRVLKAEAALREKEEENDILQ 982


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,184,803
Number of Sequences: 28952
Number of extensions: 219271
Number of successful extensions: 606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)