Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0880
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   2e-22
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 81   1e-15
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                64   1e-10
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   1e-09
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   1e-06
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)             33   0.17 

>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score =  102 bits (245), Expect = 2e-22
 Identities = 62/164 (37%), Positives = 90/164 (54%), Gaps = 13/164 (7%)
 Frame = +2

Query: 65  SLKMNNGRDMPAIGXGTYLGFDQNGVVKSKDKQLRDVVMRAIDVG*RHFDTASVYETETR 244
           ++K+NNG +MP +G GT+         KSK  Q+ + V  AI  G RH D A  Y  E  
Sbjct: 3   TVKLNNGLEMPVLGLGTW---------KSKPGQVENAVKFAIKEGYRHIDCAYAYRNEKE 53

Query: 245 NWRTVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 424
               ++ ++   VV+R+D+FIT+KLWNT+H   +V     DSLK LGLDY+DLYL+HWP+
Sbjct: 54  VGDALR-ELLGSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLYLIHWPL 112

Query: 425 GL-------------NADYSHSDVDFMETWRGLEDAQRMGILKA 517
                          N  Y++ D    +TW+ +E     G++KA
Sbjct: 113 SFRDGDEFFPKDEQGNVLYAYHDP--CDTWKAMEKLVDEGLVKA 154



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 502 GYIKGIGLSNFNKQQLERVLKEGTIKPDAIQIEVH 606
           G +K IGLSNFN +Q++ +     IKP A Q+E H
Sbjct: 150 GLVKAIGLSNFNSKQVDDICAIARIKPVANQVECH 184


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
 Frame = +2

Query: 146 KSKDKQLRDVVMRAIDVG*RHFDTASVYETETRNWRTVKMKVEEGVVKREDIFITTKLWN 325
           +S  +++ + V  AI++G RH D A +Y  E      +   + EG VKRE++F+T+KLW 
Sbjct: 61  QSSKEEVGNAVRLAIELGYRHIDCAEIYGNEGEIGEALSEVLTEGKVKREELFVTSKLWC 120

Query: 326 TQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI----GLNADYS-------HSDVDFMET 472
             H   +V  A   +LK L LDY+DLYL+H P+    G+   +S       ++      T
Sbjct: 121 DSHHPDDVLPACQATLKNLQLDYLDLYLIHIPVAFKKGVRLPHSIAEGIIGYTPEGVQNT 180

Query: 473 WRGLEDAQRMGILKA 517
           W+ +E     G+ KA
Sbjct: 181 WQAMEGLVAKGLCKA 195



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +1

Query: 496 ANGYIKGIGLSNFNKQQLERVLKEGTIKPDAIQIEVHSKTFRKKWWNFVSLK 651
           A G  K IG+SNF+ ++L ++L+  +I P   Q+E+H    ++K   F   K
Sbjct: 189 AKGLCKAIGVSNFSVKRLNKLLETASIVPACNQVELHPYLPQEKLKEFCDSK 240


>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 40/117 (34%), Positives = 62/117 (52%)
 Frame = +2

Query: 74  MNNGRDMPAIGXGTYLGFDQNGVVKSKDKQLRDVVMRAIDVG*RHFDTASVYETETRNWR 253
           MN+GR +P +G G +            D   +  V+ A++ G R  DTAS Y  E    +
Sbjct: 70  MNDGRKIPLLGLGAH------------DIHSKQAVLWALESGYRLIDTASRYHNE----Q 113

Query: 254 TVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHWPI 424
           +V   V    + R +I++ TK++ T+H   E   A   SL +LGL Y+DLYL+H+P+
Sbjct: 114 SVGEAVRCSNIPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLYLIHFPV 170



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +1

Query: 496 ANGYIKGIGLSNFNKQQLERVLKEGTIKPDAIQIEVH 606
           + G I+ IG+SNFN Q LE + ++  + P   QIEVH
Sbjct: 186 SRGLIRSIGVSNFNIQHLEALRQQTGVVPAVNQIEVH 222


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 31/84 (36%), Positives = 50/84 (59%)
 Frame = +2

Query: 170 DVVMRAIDVG*RHFDTASVYETETRNWRTVKMKVEEGVVKREDIFITTKLWNTQHRRTEV 349
           DV + A+  G R  DTA +Y+ E    + V   V +  +KREDI++TTKL  ++   +  
Sbjct: 48  DVCLFALKNGYRMLDTADIYQNE----KEVGSAVRKSGLKREDIYVTTKLKPSEEGHSNA 103

Query: 350 AQAINDSLKKLGLDYIDLYLMHWP 421
            +   +S+KKL + Y+DL+L+H P
Sbjct: 104 LKYAKESIKKLDIGYVDLFLIHTP 127



 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 502 GYIKGIGLSNFNKQQLERVLKEGTIKPDAIQIEVH 606
           G I+ +G+SNF    LE + K G   P   QIE++
Sbjct: 146 GLIRSVGVSNFGVHHLEELRKAGCRTPAINQIEIN 180


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
 Frame = +2

Query: 80  NGRDMPAIGXGTY-LGFDQNGVVKSKDKQLRDVVMRAIDVG*RHFDTASVYETETRNWRT 256
           +G  MP +G GT  LG D   VVK+           A++ G R  DTA  Y         
Sbjct: 333 SGYTMPVMGFGTATLGEDTLSVVKT-----------ALETGYRLIDTAQGYPLSEPQ--- 378

Query: 257 VKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDLYLMHW----PI 424
           V   + +  + R+DIFI TKL           +++  SL+ L  DYIDL+L+H       
Sbjct: 379 VAKAIADSGIPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIHSKTCDDF 438

Query: 425 GLNADYSHSDVDFMETWRGLEDAQRMGILKA 517
            L          + E+W+ +E+  R G +++
Sbjct: 439 LLTCAEGEPRGTWKESWKAMEELHRQGKIRS 469



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 502 GYIKGIGLSNFNKQQLERVLKEGTIKPDAIQ 594
           G I+ +G+SNFN  +L+ ++   T+   A+Q
Sbjct: 465 GKIRSLGVSNFNVDELQELVNFATVPVSAVQ 495


>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
          Length = 195

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +2

Query: 368 SLKKLGLDYIDLYLMHW 418
           SL++LG+D IDLYL+HW
Sbjct: 51  SLERLGIDRIDLYLLHW 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,886,901
Number of Sequences: 59808
Number of extensions: 412917
Number of successful extensions: 1254
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)