Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0880
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   3.6  

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 268 GRGRSRQKRRYLYHY*AVEYPAP 336
           GRGRSR+ R    HY   + PAP
Sbjct: 320 GRGRSREHRIIPSHY-IEQIPAP 341


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 445 SFGRRLHGDLARIGRCSANGYIKGIGLSNFNKQQLERVLKEGTIK 579
           ++GRR++     +   S      G+G+SNF      R  + GTI+
Sbjct: 210 NYGRRINCTYVALYPSSVQVIALGVGVSNFLSS--TRTAETGTIR 252


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 256 GSPISCFSFVNGGGIEMTLSDIY 188
           G PI C +F+  GG  +    +Y
Sbjct: 64  GFPIKCGTFLGSGGFGIVYKALY 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,849
Number of Sequences: 438
Number of extensions: 3946
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)