Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0879
         (292 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   0.29 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   0.29 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   2.0  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   2.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    20   4.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   6.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   6.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   6.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   6.2  
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    19   8.2  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.2 bits (50), Expect = 0.29
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 39  QTGHARGHRPPHSLRAGND 95
           Q  H   H PPHS+ A N+
Sbjct: 48  QMWHHHSHMPPHSVFAANN 66


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 0.29
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 39  QTGHARGHRPPHSLRAGND 95
           Q  H   H PPHS+ A N+
Sbjct: 48  QMWHHHSHMPPHSVFAANN 66


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 32  PLANWSCPGASTPTLTSS 85
           P ++W+CP  + P   SS
Sbjct: 48  PPSDWNCPQYNAPPYMSS 65


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 285  PPGXSYVETVAQHTLLYGFFPP 220
            PP    VET  QH+L+  + PP
Sbjct: 998  PPTSIRVETNDQHSLVVYWKPP 1019


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 32 PLANWSCPGASTPTLTSS 85
          P ++W+CP  + P   SS
Sbjct: 39 PPSDWNCPQYNAPPYMSS 56


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 51  ARGHRPPHSLRAGNDG 98
           A  HRPPH    G  G
Sbjct: 210 AMAHRPPHFAFPGAPG 225


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 291 RRPPGXSYVETVAQHT 244
           ++  G  Y ET++ HT
Sbjct: 531 QKEKGDEYYETISNHT 546


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 291 RRPPGXSYVETVAQHT 244
           ++  G  Y ET++ HT
Sbjct: 531 QKEKGDEYYETISNHT 546


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 291 RRPPGXSYVETVAQHT 244
           ++  G  Y ET++ HT
Sbjct: 531 QKEKGDEYYETISNHT 546


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 291 RRPPGXSYVETVAQHT 244
           ++  G  Y ET++ HT
Sbjct: 531 QKEKGDEYYETISNHT 546


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
           protein 8 protein.
          Length = 99

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 159 CCPSGDRSPGALVEVIG 109
           C   G++  GAL E+IG
Sbjct: 45  CDALGNQIKGALPEIIG 61


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,160
Number of Sequences: 336
Number of extensions: 1486
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5109936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)