Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0879
         (292 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    29   0.14 
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   0.74 
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    25   1.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   3.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    23   6.9  
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     23   9.1  

>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   IIPGGTRTIDAAGKLVMPGGIDPHTHF 81
           +I   T  I A  K+V  GG+D H HF
Sbjct: 381 VIGSSTDVISAENKIVTYGGMDSHVHF 407


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 1   IIPGGTRTIDAAGKLVMPGGIDPHTHFELEMMGAKTADDFY 123
           I+P     +    +++M G IDP +H  L       ADD Y
Sbjct: 398 IVPARQMFLAFGARILMKGTIDPESHKALIEKNISWADDEY 438


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 43  LVMPGGIDPHTHFELEMMGAKTADDFYK 126
           L++ GG++ HT  +L      TA D YK
Sbjct: 184 LIVSGGLNIHTFEDLSAFNEDTAADGYK 211


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 220 NXXRPLEATAPFQVERSQLWLLSLRRP 140
           N    ++ T+ F +E S L LLS  RP
Sbjct: 414 NGEEEMDTTSAFNIENSHLTLLSPIRP 440


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 98   PIISSSK*VWGSMPPGMTSLPAASMVRVPP 9
            P +S+++      PP  T+LP++S V  PP
Sbjct: 1062 PPVSATRPQIPQPPPVSTALPSSSAVSRPP 1091


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 37  GKLVMPGGIDPHTHFELEMMGAKTADD 117
           G +VMPG I  H H    ++    ADD
Sbjct: 55  GHIVMPGLISLHVHLAQSLL-RSAADD 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,937
Number of Sequences: 5004
Number of extensions: 23082
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)