Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0879
(292 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1072 + 34295227-34295316,34295410-34295583,34296268-342963... 79 8e-16
12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501... 34 0.022
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460... 29 0.83
01_07_0201 + 41956938-41957022,41957123-41957214,41957460-419575... 28 1.1
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905... 28 1.4
03_01_0100 - 791425-792996 27 1.9
04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139 27 2.5
04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779 27 2.5
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490... 27 3.3
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 26 4.4
07_01_0034 + 290094-290265,290378-290793 26 5.8
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279... 26 5.8
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 26 5.8
01_01_0488 - 3597652-3598761,3599619-3600860 26 5.8
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284... 25 7.7
>01_06_1072 +
34295227-34295316,34295410-34295583,34296268-34296322,
34296410-34296679,34296881-34297092,34297276-34297396,
34297674-34297761,34297834-34297912,34298092-34298179,
34298312-34298352,34298477-34298529,34298623-34298779,
34298862-34299053
Length = 539
Score = 78.6 bits (185), Expect = 8e-16
Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +1
Query: 19 RTIDAAGKLVMPGGIDPHTHFELEMMGAKTADDFYKXXXXXXXXXXXXIIDFVLPEKGQ- 195
+ IDA GK VMPGGIDPHTH E+E MG T DDF+ IDFV+P G
Sbjct: 95 KVIDATGKYVMPGGIDPHTHLEMEFMGTVTIDDFFSGHAAALAGGTTMHIDFVIPVNGNL 154
Query: 196 -SLLEAYXNWXEKAV**GVLRYGLHVGVTWWS 288
+ LE+Y EK+ + YG H+ +T W+
Sbjct: 155 TAGLESYKQKAEKS----AMDYGFHMAITKWN 182
>12_02_0282 -
16749358-16749445,16749640-16749695,16749965-16750137,
16750768-16750924,16751279-16751422,16751959-16752134,
16753024-16753045,16753845-16753937,16754259-16754431,
16754550-16754760
Length = 430
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 7 PGGTRTIDAAGKLVMPGGIDPHTHFELEMMGAKTADD 117
PG T+D AG++++PG ++ H H + + ADD
Sbjct: 55 PGAAATVDLAGRILLPGFVNTHVHTS-QQLARGIADD 90
>02_03_0220 +
16545571-16545573,16545717-16545818,16545980-16546008,
16549421-16553036
Length = 1249
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 142 PQPGCPCRSHRQF*RPSFPARSECGGRC 59
P C CR H + R A +CGGRC
Sbjct: 90 PLAPCRCRGHGRRDRARAGAAPQCGGRC 117
>01_07_0201 +
41956938-41957022,41957123-41957214,41957460-41957561,
41957691-41957763,41958297-41958403,41958476-41958599,
41959004-41959198,41959515-41959600,41959695-41959802,
41960171-41960266,41960347-41960445,41960562-41960636,
41961040-41961171,41961252-41961367,41961935-41962109
Length = 554
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 16 TRTIDAAGKLVMPGGIDPHTHF 81
T ++ +G +V+PG ID H HF
Sbjct: 66 TMELNLSGNVVLPGFIDSHVHF 87
>09_02_0420 +
9051728-9051754,9053244-9053530,9055263-9055500,
9057010-9057204,9058075-9058339,9058520-9058827
Length = 439
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 27 RCRWQTGHARGHRPPHSLRAGNDGR*NCR*LLQGH 131
R R TGH +G +PP S +G R + R L GH
Sbjct: 315 RRRRATGHPKGRQPPGSSGSGARARQHRRRLDDGH 349
>03_01_0100 - 791425-792996
Length = 523
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 10 GGTRTIDAAGKLVMPGGIDPHTHFEL 87
GG +DAA +V PG +D H HF L
Sbjct: 332 GGKEGVDAA--VVRPGRLDVHIHFTL 355
>04_03_0430 +
15836839-15836973,15837267-15837359,15838975-15839139
Length = 130
Score = 27.1 bits (57), Expect = 2.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 9 WRHTDHRCRWQT 44
W+++D RCRW T
Sbjct: 15 WKYSDERCRWHT 26
>04_03_0420 +
15703479-15703613,15703907-15703999,15705615-15705779
Length = 130
Score = 27.1 bits (57), Expect = 2.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3
Query: 9 WRHTDHRCRWQT 44
W+++D RCRW T
Sbjct: 15 WKYSDERCRWHT 26
>07_01_0654 -
4900509-4900518,4900626-4900709,4900844-4901377,
4901462-4901619,4901703-4901832,4901918-4901999,
4902097-4902230,4902314-4902410,4902512-4902788,
4902881-4903024
Length = 549
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 195 LPLFR*NEVNYGCCPSGDRSPGALVEVIGSFSAHHFQLEVSVGVDAP 55
LPL+ N V++ R P LV+VIG + H L S G++ P
Sbjct: 116 LPLYIFNFVDFEDLDERARHPNGLVDVIGQLTVVH-PLVQSNGLNGP 161
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 22 TIDAAGKLVMPGGIDPHTHFELEMM 96
T+ A +L+ GG+ H HF LE++
Sbjct: 414 TVHAMSELIAGGGVLCHPHFTLELV 438
>07_01_0034 + 290094-290265,290378-290793
Length = 195
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 75 SVGVDAPGHDQFASGIDGPCAS 10
+V +DAPG F G+ G CA+
Sbjct: 93 TVKLDAPGKHYFICGVPGHCAA 114
>06_02_0060 -
11026885-11026929,11027732-11027756,11027886-11027992,
11028023-11028103,11028301-11028405,11031495-11031762,
11031854-11032056
Length = 277
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 20 GPSMPLANWSCPGASTPTLTSSWK*WALKLPMTSTRAP 133
GP+ P A+ G S P+L + W +A P S+ +P
Sbjct: 12 GPAAPAAS---AGESQPSLLADWNSYAASRPDASSSSP 46
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 15 HTDHRCRWQTGHARGHRPP 71
H+ + WQTG+A H PP
Sbjct: 849 HSKNNTGWQTGNASEHIPP 867
>01_01_0488 - 3597652-3598761,3599619-3600860
Length = 783
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -3
Query: 71 WGSMPPGMTSLPAASMV--RVPPGM 3
WG + PG LP A +V R+ PG+
Sbjct: 340 WGGLRPGAPGLPPAKVVAPRLSPGL 364
>01_05_0110 +
18225431-18226992,18227158-18228132,18228343-18228437,
18228556-18228842
Length = 972
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 6 SWRHTDHRCRWQTGHARGHRPPHSLRAG 89
+WRH H C W TG G P R G
Sbjct: 52 TWRHDIHPCNW-TGITCGDVPWRQRRHG 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,023,910
Number of Sequences: 37544
Number of extensions: 207540
Number of successful extensions: 546
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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