Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0879
         (292 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   4e-10
SB_23823| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.37 
SB_56929| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.65 
SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2)              29   0.86 
SB_2006| Best HMM Match : Aldolase (HMM E-Value=4.7)                   29   0.86 
SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44)       29   0.86 
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.0  
SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.5  
SB_11710| Best HMM Match : Urease_alpha (HMM E-Value=0)                27   3.5  
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)             26   4.6  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    26   6.1  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            26   6.1  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.0  
SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.0  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    25   8.0  

>SB_53339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 894

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 23/41 (56%), Positives = 30/41 (73%)
 Frame = +1

Query: 1   IIPGGTRTIDAAGKLVMPGGIDPHTHFELEMMGAKTADDFY 123
           I PGGT+ IDA+ KL++PGGID HTH ++  MG    DDF+
Sbjct: 44  ICPGGTKVIDASRKLILPGGIDTHTHLQMPFMGTTAIDDFF 84


>SB_23823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 19  RTIDAAGKLVMPGGIDPHTH 78
           +  DA G LVMPG ID HTH
Sbjct: 50  QVFDAKGCLVMPGLIDMHTH 69


>SB_56929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 25  IDAAGKLVMPGGIDPHTH 78
           IDA G  V+PG ID HTH
Sbjct: 87  IDATGMCVLPGLIDGHTH 104


>SB_48855| Best HMM Match : Amidohydro_3 (HMM E-Value=0.2)
          Length = 391

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 16  TRTIDAAGKLVMPGGIDPHTH 78
           T  ID  GK + PG I+PH H
Sbjct: 53  TTVIDLEGKTMFPGFIEPHQH 73


>SB_2006| Best HMM Match : Aldolase (HMM E-Value=4.7)
          Length = 186

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 16  TRTIDAAGKLVMPGGIDPHTH 78
           T  ID  GK + PG I+PH H
Sbjct: 53  TTVIDLEGKTMFPGFIEPHQH 73


>SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44)
          Length = 572

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 16  TRTIDAAGKLVMPGGIDPHTH 78
           T  ID  GK + PG I+PH H
Sbjct: 53  TTVIDLEGKTMFPGFIEPHQH 73


>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
 Frame = +3

Query: 39  QTGHARGHRPPHSLRA--GNDGR*NCR*L-----LQGHPGCGRRRDNNHN*LRST*KGAV 197
           +TG ARG   P  LR   G  G    R L     +QG PG    +  N    R+  +G +
Sbjct: 299 KTG-ARGATGPRGLRGLRGPQGNQGLRGLKGSRGVQGRPGKNGAKGRNGAPGRTGARGKI 357

Query: 198 ASRGLXXLXGKSRIIRCAALRSPR 269
             RG   L G   +     LR P+
Sbjct: 358 GPRGFTGLKGAKGVRGATGLRGPQ 381


>SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 66  VDAPGHDQFASGIDGPCASRND 1
           +D+P HD+F   ++ P  SR D
Sbjct: 839 MDSPQHDEFNDSMNSPVGSRRD 860


>SB_11710| Best HMM Match : Urease_alpha (HMM E-Value=0)
          Length = 726

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   IIPGGTRTIDAAGKLVMPGGIDPHTHF 81
           ++  GT  I   G ++  GG+D H HF
Sbjct: 416 VVGVGTEAIAGEGLVLTAGGMDAHIHF 442


>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
          Length = 807

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +2

Query: 8   LEAHGPSM-PLAN----WSCPGASTPTLTSSWK*WALKLPMTSTRAPGLRSPEGQQP*LT 172
           LE H P + PL N    +   G S      SWK  A  LP+    +PG+   E   P  T
Sbjct: 142 LEIHSPGITPLGNPQSRYYSSGNSQSRYYPSWKSTAQVLPLLEIHSPGITLLEIYSPGFT 201


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 177 NEVNYGCCPSGDRSPGAL 124
           N V   CCPSG+ +P A+
Sbjct: 933 NTVPTNCCPSGETTPSAV 950


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 87   QLEVSVGVDAPGHDQFASGIDG 22
            Q    V V++PGHDQ+   +DG
Sbjct: 1582 QSSSGVVVESPGHDQYRVKVDG 1603


>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 96   HHFQLEVSVGVDAPGHDQFASGIDGPCASR 7
            HHF +E  V +  PG D    GI   CAS+
Sbjct: 1367 HHFHMETQVALTVPGED----GITIFCASQ 1392


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 19  RTIDAAGKLVMPGGIDPHTH 78
           + IDA   ++MPG +D H H
Sbjct: 48  KIIDAEELVIMPGVVDSHVH 67


>SB_4753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 72  VGVDAPGHDQFASGIDG 22
           V V++PGHDQ+   +DG
Sbjct: 461 VVVESPGHDQYRVKVDG 477


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 205  LEATAPFQVERSQLWLLSLRRPQPGCP 125
            L +T P   ER   W+ ++R    G P
Sbjct: 958  LNSTRPLNYERKAFWVFTIRSTDSGTP 984


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,842,923
Number of Sequences: 59808
Number of extensions: 220007
Number of successful extensions: 435
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 328507322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)