Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0879
(292 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase / dihydrop... 75 1e-14
At3g55850.2 68416.m06206 amidohydrolase family protein weak simi... 30 0.31
At3g55850.1 68416.m06205 amidohydrolase family protein weak simi... 30 0.31
At2g17370.1 68415.m02006 3-hydroxy-3-methylglutaryl-CoA reductas... 27 2.2
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 25 6.6
At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR... 25 6.6
At2g07070.1 68415.m00807 AT hook motif-containing protein contai... 25 6.6
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c... 25 6.6
At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase... 25 8.8
At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase... 25 8.8
>At5g12200.1 68418.m01431 dihydropyrimidinase / DHPase /
dihydropyrimidine amidohydrolase / hydantoinase (PYD2)
identical to dihydropyrimidine amidohydrolase (PYD2)
[Arabidopsis thaliana] GI:28194047; similar to SP|Q9EQF5
Dihydropyrimidinase (EC 3.5.2.2) (DHPase) (Hydantoinase)
(DHP) {Mus musculus}; contains Pfam profile PF01979:
Amidohydrolase family
Length = 531
Score = 74.5 bits (175), Expect = 1e-14
Identities = 37/89 (41%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +1
Query: 25 IDAAGKLVMPGGIDPHTHFELEMMGAKTADDFYKXXXXXXXXXXXXIIDFVLPEKGQSL- 201
+DA GK VMPGGIDPHTH +E MG +T DDF+ IDFV+P G +
Sbjct: 88 LDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLVA 147
Query: 202 -LEAYXNWXEKAV**GVLRYGLHVGVTWW 285
EAY N ++ + YG H+ +T W
Sbjct: 148 GFEAYENKSRES----CMDYGFHMAITKW 172
>At3g55850.2 68416.m06206 amidohydrolase family protein weak
similarity to SP|Q06555 Exoenzymes regulatory protein
aepA precursor {Erwinia carotovora}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 583
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 4 IPGGTRTIDAAGKLVMPGGIDPHTH 78
I GT ++ GK+V+PG ID H H
Sbjct: 91 IGDGTMEVNLEGKIVVPGLIDSHVH 115
>At3g55850.1 68416.m06205 amidohydrolase family protein weak
similarity to SP|Q06555 Exoenzymes regulatory protein
aepA precursor {Erwinia carotovora}; contains Pfam
profile PF01979: Amidohydrolase family
Length = 576
Score = 29.9 bits (64), Expect = 0.31
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 4 IPGGTRTIDAAGKLVMPGGIDPHTH 78
I GT ++ GK+V+PG ID H H
Sbjct: 84 IGDGTMEVNLEGKIVVPGLIDSHVH 108
>At2g17370.1 68415.m02006 3-hydroxy-3-methylglutaryl-CoA reductase 2
/ HMG-CoA reductase 2 (HMGR2) identical to SP|P43256
3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC
1.1.1.34) (HMG- CoA reductase 2) (HMGR2) {Arabidopsis
thaliana}
Length = 562
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 122 TRAPGLRSPEGQQP*LTSFYLKRGSRF*RPTXIGGK 229
TRAP +R P ++ L FYL+ S F R + I K
Sbjct: 270 TRAPVVRFPSARRAALVMFYLQDPSNFERLSLIFNK 305
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 117 VIGSFSAHHFQLEVSVGVDA 58
++ F +HH +LE+S+ DA
Sbjct: 384 ILHPFHSHHLRLEISIAYDA 403
>At2g16870.1 68415.m01941 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1109
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 3 HSWRHTDHRC 32
HSW HTD RC
Sbjct: 903 HSWEHTDIRC 912
>At2g07070.1 68415.m00807 AT hook motif-containing protein contains
Pfam profile PF02178: AT hook motif
Length = 501
Score = 25.4 bits (53), Expect = 6.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 8 LEAHGPSMPLANWSCPGASTP 70
++ H P P+ +W+C G P
Sbjct: 343 VDFHNPLAPIVSWNCCGLGNP 363
>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
contains Pfam PF01422: NF-X1 type zinc finger; similar
to transcriptional repressor NF-X1 (SP:Q12986) [Homo
sapiens]; similar to EST gb|T21002
Length = 1188
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 41 NWSCPGASTPTLTSS 85
NW CPG + LTSS
Sbjct: 272 NWRCPGCQSVQLTSS 286
>At3g21500.2 68416.m02713 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 629
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 HTDH-RCRWQTGHARGHRPPHSLRAGNDGR*NCR*LLQGHPGCGRRRDNNHN*LRST*KG 191
+T H + W GH PH + G G+ G G +RR++ H+ +
Sbjct: 112 NTPHDKILWDVGH---QSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSS 168
Query: 192 AVASRGLXXLXGK 230
S GL G+
Sbjct: 169 TTLSAGLGMAVGR 181
>At3g21500.1 68416.m02712 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative strong similarity to
1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon
esculentum] GI:5059160, DEF (deficient in
photosynthesis) protein [Arabidopsis thaliana]
GI:1399261; ; contains Pfam profiles PF02779:
Transketolase, pyridine binding domain, PF02780:
Transketolase, C-terminal domain
Length = 628
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 HTDH-RCRWQTGHARGHRPPHSLRAGNDGR*NCR*LLQGHPGCGRRRDNNHN*LRST*KG 191
+T H + W GH PH + G G+ G G +RR++ H+ +
Sbjct: 112 NTPHDKILWDVGH---QSYPHKILTGRRGKMKTIRQTNGLSGYTKRRESEHDSFGTGHSS 168
Query: 192 AVASRGLXXLXGK 230
S GL G+
Sbjct: 169 TTLSAGLGMAVGR 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,337,628
Number of Sequences: 28952
Number of extensions: 142742
Number of successful extensions: 277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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