Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0878
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    51   1e-07
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   2.5  
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   3.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   3.3  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          27   3.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   4.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.4  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   4.4  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   4.4  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   5.8  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   7.7  

>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 42/123 (34%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
 Frame = +3

Query: 276 IWVLGKKYSAIQDL---DRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMV 446
           IW LG  Y  I+D    ++   D  S+I  TYR G    G E +TSD GWGCM+R  Q +
Sbjct: 26  IWFLGHSYK-IEDSQWPEKFLYDSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTL 82

Query: 447 LGVALVRVHLSVDWVWSPETRIQLI*RSYQRLKKGNKHLIPIHQVALMGCPLKEKKLAQW 626
           L   L         +  PE +++ I   +            IHQ   MG  L +    QW
Sbjct: 83  LANCL--------RICYPEKQLKEILALFADEPSAP---FSIHQFVTMGKTLCDINPGQW 131

Query: 627 FGP 635
           FGP
Sbjct: 132 FGP 134


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 474 SVL*QEQHLIPSVHIVTYSPILYQKSNLHHQLVQ 373
           +VL ++   +P +  +T SP   +K NL+H+L Q
Sbjct: 169 AVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQ 202


>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 199

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 462 VRVHLSVDWVWSPETRIQLI*RSYQR 539
           +R  L +   WSPE R+Q +  +YQ+
Sbjct: 99  IRKSLQLQTPWSPEARLQAVKLAYQK 124


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 457 ATPNTICPHRNIQPHPLSEVKPSSP 383
           A P T+   RN  P+P +  +P+ P
Sbjct: 344 AAPTTVSSERNAPPYPSAPTRPTPP 368


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 520 ISWILVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEV 398
           I W +    H  ST K     A+ NTI  H + +  PL ++
Sbjct: 132 IKWSIEWCLHESSTSKDLTDEASENTIITHSHPESEPLEKI 172


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 324  IRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVL 449
            IR  +TSI +   RK FV   DE L + +  GC++     +L
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGCLIEKSNAIL 1358


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 450 GVALVRVHLSVDWVWSPETRIQLI*RSYQRLKKGNKHL 563
           G+A VRV  ++DW      ++  +    Q  +KGNK L
Sbjct: 79  GLACVRVFQAIDWNSKIFIKMLQLPNQIQNSRKGNKRL 116


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 184 FKMDAVFDMCYLSGADGNNVEPNEFLKQRKVSGYWGKNTVLY 309
           FK + VFD+  LS    N+ E ++ +K  K++     N V+Y
Sbjct: 150 FKDNEVFDILLLSDLVFNHTEHSKLIKSCKMAIEGNPNAVVY 191


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 474  LSVDWVWSPETRIQLI*RSYQRLKKGNKHLIPIHQVALMGCPLKEKKLAQW 626
            + +DW +       +I  +  +L K  K L   H++ L G P++   L  W
Sbjct: 1484 VKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELW 1534


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 462 QEQHLIPSVHIVTYSPILYQKSN 394
           Q+QH IP ++   YSP+L   S+
Sbjct: 340 QQQHRIPKLNASNYSPLLSPSSH 362


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 289 GKNTVLYKIWIVLEE-ISHQ*YGVRTEKALYQLVMKV 396
           G  T+LY IW+VL   +    Y +   K L +L+ K+
Sbjct: 2   GFATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKI 38


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 584 IDGVPSEGKEVGPVVWT*IQSLQ-VLKK 664
           IDG     KE+ P++W   + LQ VLK+
Sbjct: 674 IDGCTFASKEISPIMWGVYEKLQKVLKE 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,598
Number of Sequences: 5004
Number of extensions: 70216
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)