Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0878
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 62 3e-10
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522... 62 5e-10
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741... 31 0.85
02_03_0106 + 15292869-15296138 29 2.6
09_03_0170 - 13035371-13036504 29 3.4
09_04_0363 + 16957949-16958361,16958524-16958527 29 4.5
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053... 28 7.9
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Frame = +3
Query: 264 TKESIWVLGKKYS-AIQDLDR----------IRRDITSIIWCTYRKGFVPIGDEGLTSDK 410
T +W LGK Y + ++L D +S IW TYRKGF I D TSD
Sbjct: 12 TSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDV 71
Query: 411 GWGCMLRCGQMVLGVALVRVHLSVDW 488
WGCM+R QM++ AL+ HL W
Sbjct: 72 NWGCMVRSSQMLVAQALIFHHLGRSW 97
>04_04_1624 -
34849385-34849410,34849748-34851052,34852121-34852294,
34852386-34852456,34852563-34852618,34853047-34853185,
34853310-34853695,34853801-34853851,34853936-34854021,
34854112-34854553,34856241-34856315,34856457-34856593,
34856679-34856838,34856917-34857012,34857093-34857247,
34857900-34858032
Length = 1163
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Frame = +3
Query: 264 TKESIWVLGKKYS-----AIQDLDR------IRRDITSIIWCTYRKGFVPIGDEGLTSDK 410
T +W LGK Y + D D D +S IW TYR+GF I D TSD
Sbjct: 354 TSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDV 413
Query: 411 GWGCMLRCGQMVLGVALVRVHLSVDW 488
WGCM+R QM++ AL+ HL W
Sbjct: 414 NWGCMVRSSQMLVAQALIFHHLGRSW 439
>11_03_0126 +
10371536-10371596,10372467-10372544,10373968-10374127,
10374286-10374610,10374708-10374860,10374985-10375236,
10375356-10375445,10375543-10375621,10375712-10375818,
10375921-10376048,10376329-10376419
Length = 507
Score = 31.1 bits (67), Expect = 0.85
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 294 KYSAIQDLDRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVH 473
K+S Q ++ I R IT++I +RK + G T GW M+ + L L
Sbjct: 369 KFST-QVVNEINR-ITTVIPGGFRKALTDVQVNGYTIPSGWLVMISPMGVHLNPKLFEDP 426
Query: 474 LSVD-WVWSPETRIQL 518
L D W W+ E RI +
Sbjct: 427 LKFDPWRWTEEKRISM 442
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/101 (26%), Positives = 45/101 (44%)
Frame = -1
Query: 511 ILVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSSPIGTKPFLYVHHIIDVIS 332
IL+SG STD +L++ T+C N P+S VK + + L+ + I
Sbjct: 512 ILISGQQRLSTDPLSLSKPRHLTLCNMENRFDDPIS-VKQQMSLRSL-MLFNSPNVRSID 569
Query: 331 LLIRSKSCIALYFFPSTQILSFVLGIR*VQHYYHPLPIDNT 209
L+ S SC+ + T + + I + H + L +D T
Sbjct: 570 NLVESASCLRVLDLSKTALGALPKSIGNLLHLRY-LNLDET 609
>09_03_0170 - 13035371-13036504
Length = 377
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +1
Query: 130 LYIDVVDETINL-FVKKL*FKMDAVFDMCYLSGADGNNVEPNEFLKQRKVSGYWGKNTVL 306
+++D+V L FV KL F D D C G N+ E +WG
Sbjct: 314 VHVDLVARDGELAFVPKLPFCADTYLDTC------GTNIWSYELAHGAATKEFWGTERAD 367
Query: 307 YKIWI 321
Y IW+
Sbjct: 368 YSIWV 372
>09_04_0363 + 16957949-16958361,16958524-16958527
Length = 138
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 496 DHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVK 395
DH ++T T T +TPN I P P S +K
Sbjct: 85 DHLKATSPATATASTPNIIVPMTPAATAPTSSLK 118
>07_03_1624 +
28204892-28205024,28205160-28205242,28205305-28205376,
28205889-28205946,28206554-28206603,28207805-28207873,
28208183-28208317,28208410-28208581,28208663-28208754,
28208837-28209244,28209783-28210704,28211592-28211831,
28211898-28212229,28212460-28212608,28213265-28213841,
28214078-28214224,28214693-28214968,28215296-28215403,
28215634-28215839,28216079-28216217,28216329-28216982,
28218040-28218099,28218234-28218388,28218414-28218636,
28218729-28218773
Length = 1834
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = -1
Query: 424 IQPHPLSEVKPSSPIGTKPFLYVHHIIDVISLLIRSKSCIALYFFPSTQILSFV 263
++ P+ + S+P G K L++H +I ++ R + + ++ S +L F+
Sbjct: 48 VEEVPVIRIYGSTPAGQKTCLHIHRLISLVIFDSRLQPSLRVFDALSVSVLPFL 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,547,196
Number of Sequences: 37544
Number of extensions: 400640
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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