Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0878
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)         33   0.28 
SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)               29   2.7  
SB_58459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
          Length = 878

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 521 LKIIPKVEERKQAPYSYPSSGIDGVPSEGKEVGPVVWT*IQSL-QVLKKLTVYDQW 685
           LKI+    ++K + YS       GV SEGK VG   W    ++ QVLKKL+ +D W
Sbjct: 87  LKILEAFLDKKDSLYSIHQIAQMGV-SEGKAVGS--WFGPNTVAQVLKKLSAFDDW 139


>SB_52473| Best HMM Match : MMR_HSR1 (HMM E-Value=0.0026)
          Length = 936

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 481  TDKCTLTRATPNTICPHRNIQPHPLSEVKPSSPIGTKPFLYV 356
            T   TL    PN++C     +P+ L   KP S   T P LYV
Sbjct: 897  TQSPTLCHTKPNSLC---YTKPNSLCHTKPDSLCHTNPVLYV 935


>SB_58459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 439 CPHRNIQPH--PLSEVKPSSPIGTKPFLYVHHIIDVIS 332
           CPHR   PH  PLS +   +   T+   Y HH I +I+
Sbjct: 12  CPHRRSSPHRLPLSRINVGTHADTE---YPHHNIGIIA 46


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 433 HRNIQPHPLSEVKPSSPIGTKPFL-YVHHIIDVISLLIRSKSCIALYFFPSTQILSFVLG 257
           HR+  P P S + PSS I T+P L  VH+    IS L R          PS+ +L F   
Sbjct: 328 HRS--PVPSSHLLPSSTITTQPSLTIVHNYHPAISYLHRPP-------VPSSHLLPF--- 375

Query: 256 IR*VQHYYHP 227
              + H YHP
Sbjct: 376 ---IAHQYHP 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,020,400
Number of Sequences: 59808
Number of extensions: 487551
Number of successful extensions: 1011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)