Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0878
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical ...   100   1e-21
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    51   9e-07
Z81504-2|CAB04119.1|  351|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U23514-7|AAC46539.3|  493|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical p...    28   5.4  
AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    27   9.4  
L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger pro...    27   9.4  
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    27   9.4  

>AL110500-3|CAB54483.1|  493|Caenorhabditis elegans Hypothetical
           protein Y87G2A.3 protein.
          Length = 493

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/120 (39%), Positives = 72/120 (60%)
 Frame = +3

Query: 276 IWVLGKKYSAIQDLDRIRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGV 455
           I+ LGK+ S    ++ +++ +TS  W TYR+ F PIG  G ++D+GWGCMLRC QM+LG 
Sbjct: 37  IFALGKEISKEDGIEAMKKYVTSRFWFTYRRDFSPIGGTGPSTDQGWGCMLRCAQMLLGE 96

Query: 456 ALVRVHLSVDWVWSPETRIQLI*RSYQRLKKGNKHLIPIHQVALMGCPLKEKKLAQWFGP 635
            L+R H+   + W  E   ++  +  Q        L  IHQ+A MG   + K++++WFGP
Sbjct: 97  VLLRRHIGRHFEWDIEKTSEIYEKILQMFFDEKDALYSIHQIAQMGV-TEGKEVSKWFGP 155



 Score = 33.1 bits (72), Expect = 0.19
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = +2

Query: 518 YLKIIPKVEERKQAPYSYPSSGIDGVPSEGKEVGPVVWT*IQSLQVLKKLTVYDQW 685
           Y KI+    + K A YS       GV +EGKEV         + QV+KKLT++D W
Sbjct: 118 YEKILQMFFDEKDALYSIHQIAQMGV-TEGKEVSKWFGP-NTAAQVMKKLTIFDDW 171


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = +3

Query: 285 LGKKYSAIQDLDRIRR-------DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQM 443
           LG++YS   D   +R        D  S +W TYR  F  + D   T+D GWGCM+R  QM
Sbjct: 151 LGRRYSTSVDESGLRSGFENFCSDYYSRLWITYRTDFPALLDTDTTTDCGWGCMIRTTQM 210

Query: 444 VLGVALVRVHLSVDWVWSPETR 509
           ++  A++      DW ++   R
Sbjct: 211 MVAQAIMVNRFGRDWRFTRRKR 232


>Z81504-2|CAB04119.1|  351|Caenorhabditis elegans Hypothetical
           protein F15H9.2 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 335 ISSNTIQILYSTVFFPQYPDTFLC--FRNSLGSTLLPSAPDR*HISNTASILNHSF 174
           ISS+T   +Y  +F  + P   LC  FR++    +  +AP++ +       L H F
Sbjct: 88  ISSHTSMSIYVFIFAFELPSALLCFVFRHNAAQNISRTAPNKKYFKTFTLFLTHLF 143


>U23514-7|AAC46539.3|  493|Caenorhabditis elegans Hypothetical
           protein F48E8.3 protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = -1

Query: 478 DKCTLTRATPNTICPHRNIQPHPLSEVKPSSPIGTKPFLYVHHIIDVISLLIRSK 314
           D   + RA    I    NIQ HP + V P  P     FL    I    +LLI SK
Sbjct: 237 DGVKIARALGAKIIGMENIQIHPTAFVDPKDPSAGTKFLAAEAIRGKGALLINSK 291


>Z92786-10|CAB07212.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 229 DGNNVEPNEFLKQRKVSGYWGKNTVLYKIWIVLEEISHQ*YGVRTE 366
           D NNVEP+E   + +   Y     +  KIW    E+ H  Y +R E
Sbjct: 568 DTNNVEPHEVFGETEHVEYKNGEELYRKIWYFPHEV-HTSYDLRIE 612


>AL021473-3|CAA16306.3|  984|Caenorhabditis elegans Hypothetical
           protein Y20C6A.1 protein.
          Length = 984

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 229 DGNNVEPNEFLKQRKVSGYWGKNTVLYKIWIVLEEISHQ*YGVRTE 366
           D NNVEP+E   + +   Y     +  KIW    E+ H  Y +R E
Sbjct: 568 DTNNVEPHEVFGETEHVEYKNGEELYRKIWYFPHEV-HTSYDLRIE 612


>Z92973-2|CAB07492.2|  964|Caenorhabditis elegans Hypothetical
           protein Y6G8.2 protein.
          Length = 964

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 229 DGNNVEPNEFLKQRKVSGYWGKNTVLYKIWIVLEEISHQ*YGVRTE 366
           D NNVEP+E   + +   Y     +  KIW    E+ H  Y +R E
Sbjct: 545 DTNNVEPHEVFGETEHVEYKNGGELHRKIWYFPHEV-HTSYDLRIE 589


>Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical
           protein F15H9.3 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = -3

Query: 335 ISSNTIQILYSTVFFPQYPDTFLCF------RNSLGSTLLPSAPDR*HISNTASILNHSF 174
           ISS+    +Y+ +F  + P T LCF        ++     PS+  + ++   + IL H F
Sbjct: 88  ISSHLSITIYTFIFSFEVPSTLLCFIYRHTSSQNISKKTNPSSKSKLYLEKASLILTHLF 147

Query: 173 -FTKRF 159
            F+  F
Sbjct: 148 PFSSAF 153


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 494 VTRNKDPTYLKIIPKVEERKQAPYSYPSS 580
           +  + DPT   I+PK E  KQ P S P+S
Sbjct: 677 IAHHLDPT--SIVPKAEVHKQEPLSAPTS 703


>L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform c protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 494 VTRNKDPTYLKIIPKVEERKQAPYSYPSS 580
           +  + DPT   I+PK E  KQ P S P+S
Sbjct: 445 IAHHLDPT--SIVPKAEVHKQEPLSAPTS 471


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 494 VTRNKDPTYLKIIPKVEERKQAPYSYPSS 580
           +  + DPT   I+PK E  KQ P S P+S
Sbjct: 677 IAHHLDPT--SIVPKAEVHKQEPLSAPTS 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,715,247
Number of Sequences: 27780
Number of extensions: 379277
Number of successful extensions: 966
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)