Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0878
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to autop...    66   3e-11
At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to autop...    66   3e-11
At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to autop...    61   8e-10
At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to autop...    61   8e-10
At1g33410.1 68414.m04136 expressed protein                             32   0.41 
At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR...    28   5.0  
At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein si...    28   6.6  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    27   8.8  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    27   8.8  

>At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 471

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
 Frame = +3

Query: 255 IPKTKESIWVLGKKYSAIQ-------DLDRI----RRDITSIIWCTYRKGFVPIGDEGLT 401
           I  +   IW+LG  Y   +       D  R+    R+D +S+I  TYR+GF PIGD   T
Sbjct: 107 ISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYT 166

Query: 402 SDKGWGCMLRCGQMVLGVALVRVHLSVDW 488
           SD  WGCMLR GQM+   AL+   L   W
Sbjct: 167 SDVNWGCMLRSGQMLFAQALLFQRLGRSW 195


>At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 477

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 37/89 (41%), Positives = 47/89 (52%), Gaps = 11/89 (12%)
 Frame = +3

Query: 255 IPKTKESIWVLGKKYSAIQ-------DLDRI----RRDITSIIWCTYRKGFVPIGDEGLT 401
           I  +   IW+LG  Y   +       D  R+    R+D +S+I  TYR+GF PIGD   T
Sbjct: 107 ISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYT 166

Query: 402 SDKGWGCMLRCGQMVLGVALVRVHLSVDW 488
           SD  WGCMLR GQM+   AL+   L   W
Sbjct: 167 SDVNWGCMLRSGQMLFAQALLFQRLGRSW 195


>At2g44140.2 68415.m05491 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 422

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 41/138 (29%), Positives = 54/138 (39%), Gaps = 11/138 (7%)
 Frame = +3

Query: 255 IPKTKESIWVLGKKYSAIQD-----------LDRIRRDITSIIWCTYRKGFVPIGDEGLT 401
           +P T   +W+LG  Y    D           L  ++ D +S I  TYRKGF P  D   T
Sbjct: 59  LPSTTSDVWLLGVCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYT 118

Query: 402 SDKGWGCMLRCGQMVLGVALVRVHLSVDWVWSPETRIQLI*RSYQRLKKGNKHLIPIHQV 581
           SD  WGCM+R  QM+   AL+   L   W    E   Q    + +           IH +
Sbjct: 119 SDVNWGCMIRSSQMLFAQALLFHRLGRAWTKKSELPEQEYLETLEPFGDSEPSAFSIHNL 178

Query: 582 ALMGCPLKEKKLAQWFGP 635
            + G          W GP
Sbjct: 179 IIAGASY-GLAAGSWVGP 195


>At2g44140.1 68415.m05490 autophagy 4a (APG4a) identical to
           autophagy 4a [Arabidopsis thaliana]
           gi|19912143|dbj|BAB88383
          Length = 467

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 41/138 (29%), Positives = 54/138 (39%), Gaps = 11/138 (7%)
 Frame = +3

Query: 255 IPKTKESIWVLGKKYSAIQD-----------LDRIRRDITSIIWCTYRKGFVPIGDEGLT 401
           +P T   +W+LG  Y    D           L  ++ D +S I  TYRKGF P  D   T
Sbjct: 104 LPSTTSDVWLLGVCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYT 163

Query: 402 SDKGWGCMLRCGQMVLGVALVRVHLSVDWVWSPETRIQLI*RSYQRLKKGNKHLIPIHQV 581
           SD  WGCM+R  QM+   AL+   L   W    E   Q    + +           IH +
Sbjct: 164 SDVNWGCMIRSSQMLFAQALLFHRLGRAWTKKSELPEQEYLETLEPFGDSEPSAFSIHNL 223

Query: 582 ALMGCPLKEKKLAQWFGP 635
            + G          W GP
Sbjct: 224 IIAGASY-GLAAGSWVGP 240


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 244  EPNEFLKQRKVSGYWGKNTVLYKIWIVLEE 333
            +P E LK++KVSG W   T + ++W  LE+
Sbjct: 1388 KPAEVLKRKKVSGVWFPYTTVERLWWELEK 1417


>At5g58120.1 68418.m07272 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1046

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 348 IWCTY--RKGFVPIGDEGLTSDKGWGCM-LRCGQMVLGVALVRVHLSVDW 488
           I+CTY  R+ F P G E L     W C  L  G  V+G  L R     DW
Sbjct: 356 IFCTYAFRRSFAPYGFEKLAERVTWLCSNLPLGLRVMGSTL-RGKKEDDW 404


>At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein
           similar to beta-galactosidase (lactase) from Alteromonas
           haloplanktis [SP|P81650]; contains Pfam glycoside
           hydrolase domains PF02836, PF02837, PF02929, PF02930
          Length = 1107

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +2

Query: 503 NKDPTYLKIIPKVEERKQAPYSYPSSGIDGVPSEGKEVGPVVWT*IQSLQVLKKLTVYD 679
           N +    ++ PKV   K  P   P+ G  G   EGK   P +W+  Q    +  LT+ D
Sbjct: 316 NSEGFSCELSPKVANLKLNPSPSPTLGFHGYLLEGKLDSPNLWSAEQPNVYILVLTLKD 374


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 448 NTICPHRNIQPHPLSEVKPSSPIGTKP 368
           +T  P + I PH +   +PSSP G  P
Sbjct: 182 STRVPSQRITPHSVPSPRPSSPRGASP 208


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 448 NTICPHRNIQPHPLSEVKPSSPIGTKP 368
           +T  P + I PH +   +PSSP G  P
Sbjct: 181 STRVPSQRITPHSVPSPRPSSPRGASP 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,292
Number of Sequences: 28952
Number of extensions: 346609
Number of successful extensions: 802
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)