Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0877
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    30   0.31 
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    27   1.7  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    27   1.7  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   5.1  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.0  

>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 365 RKTYSHSSALNHKLVAL*MKGCKYPGKINT 454
           R+ +SH S L   L+AL  KG K PGK  T
Sbjct: 129 RRFFSHLSTLRAALIALYAKGYKGPGKYMT 158


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 462 FRSVLILPGYLQPFIYKATSLWFNAE 385
           FR+  + PG L P +    S+WF A+
Sbjct: 101 FRTTNLGPGLLSPIVVSTVSIWFMAK 126


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 92  SLRVEKYFYWQPHYLNIICSSDFYYSNTD 6
           S+RV K  YWQ  Y     +  FY+ N D
Sbjct: 111 SIRVSKLRYWQRDYRLAFPNFIFYFDNVD 139


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 127 YFLQYIYFLKLSLCVWKNIFIGNPIIL 47
           Y +QY+  +K+ L   +NI I NPII+
Sbjct: 397 YSVQYMLVIKVQLYRARNIEITNPIIV 423


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = -1

Query: 628 FWMIWXKVYVPFRIKRP*WFWCGLHVDSCPRQTYFSIKFVLPIKIHCVTKLTCERVSVGI 449
           F +IW +V + F   R    +C L ++ C +Q  +    V+ +K     +   E+  +  
Sbjct: 60  FSVIWNEVSMEFPDIRRAKVFCDLDLEFCAQQEIYDHPKVVVLKNGMWMRHVLEKNQITT 119

Query: 448 NFTRIFTALHL 416
              R F   HL
Sbjct: 120 KSARQFVKSHL 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,354
Number of Sequences: 5004
Number of extensions: 50542
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)