Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0877
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    35   0.046
08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492...    29   3.0  

>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 35.1 bits (77), Expect = 0.046
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = -3

Query: 341 WVPILQSSTKLSRQLLIVSTCEHGRRFHFENNVRSISLQLRFRINAMNINFSLVVEESDF 162
           + PIL+ +  +    + VS      RF F+ N     LQ    I  +  N+    + S F
Sbjct: 245 FTPILKDTASVVTASVSVSVTMSSFRFRFDANDLGQYLQSLSGITNLEFNY----QGSKF 300

Query: 161 ELFYIKRSNP*L-FFTIYIFFEAVSLRVEKYFYWQPHYLNII 39
            L  +    P +  F+ YI      L +E +  W P +LN++
Sbjct: 301 LLHDLHGKYPSIAIFSDYIHLNLSKLTIENHLQWCPEFLNVV 342


>08_02_0128 -
           12848227-12848619,12848699-12848827,12849108-12849279,
           12849336-12849488,12850017-12850271,12850846-12851000,
           12853319-12853456,12853545-12853715,12853878-12854063,
           12854169-12854290,12855617-12855752,12856108-12856203,
           12856294-12856356,12856846-12856993,12857324-12857514,
           12857916-12857989,12858039-12858171,12858299-12858460,
           12861649-12861745,12861866-12861962,12863994-12864141
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -3

Query: 287 STCEHGRRFHFENNVRSISLQLRFRINAMNINFSLVVEESDFELF 153
           S+C  G+ F F  + + ISL L FR+N    + +L++E S   LF
Sbjct: 20  SSCSGGKEFRFILS-QDISLPLSFRVNRFVPDRTLLIERSAPVLF 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,800,019
Number of Sequences: 37544
Number of extensions: 273741
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)