Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0877
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_38734| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         28   5.4  
SB_114| Best HMM Match : Ribosomal_L30_N (HMM E-Value=2.5)             28   5.4  

>SB_26558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 574 WFWCGLHVDSCPRQTYFSIKFVLP 503
           WFW  +H+D C  +T ++    LP
Sbjct: 288 WFWASIHMDGCADETLYTFTATLP 311


>SB_38734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 604 YVPFRIKRP*WFWCGLHVD-SCPRQTYFSIKFVLPIKI 494
           Y+P R+ RP +  CG+H D S  R TY    F L +++
Sbjct: 114 YLPERVSRPDYCICGMHKDTSKERCTYCEHPFRLELEV 151


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
 Frame = -1

Query: 628  FWMIWXKVYVPFRIKRP*WFW---------CGLHVDSCPRQTY 527
            FW  W K + P  ++R  W+            L VDSCPR+ +
Sbjct: 1813 FWTAWMKYFAPTLLRRDKWYRPRDNLKSGDLVLEVDSCPRRKW 1855


>SB_114| Best HMM Match : Ribosomal_L30_N (HMM E-Value=2.5)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 604 YVPFRIKRP*WFWCGLHVD-SCPRQTYFSIKFVLPIK 497
           Y+P R+ RP +  CG+H D S  R TY    F L ++
Sbjct: 282 YLPERVSRPDYCICGMHKDTSKERCTYCEHPFRLELE 318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,934,182
Number of Sequences: 59808
Number of extensions: 338311
Number of successful extensions: 720
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)