Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0877
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine re...    31   0.51 
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AF003145-7|AAB57714.2|  352|Caenorhabditis elegans Serpentine
           receptor, class z protein4 protein.
          Length = 352

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -3

Query: 128 LFFTIYIFFEAVSLRVEKYFYWQP---HYLNIICSSDFY 21
           + F +Y++   ++ + EK  Y+ P   H+ ++ICS  FY
Sbjct: 34  VIFPLYVYVYRLNRKTEKLAYFYPITKHFYSVICSMQFY 72


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 164 FELFYIKRSNP*LFFTIYIFFEAVSLRVEK 75
           FE +Y+K SNP L   + + F +  L +EK
Sbjct: 336 FEKWYLKLSNPNLSILVALLFASSGLAIEK 365


>Z99281-4|CAB16509.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57G11C.7 protein.
          Length = 571

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = -1

Query: 544 CPRQTYFSIKFVLPIKIHCVT 482
           CPR+T+++ +F++  + HC++
Sbjct: 196 CPRRTHYAGQFIVSFEEHCIS 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,101
Number of Sequences: 27780
Number of extensions: 275709
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)