Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0875
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    29   0.43 
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    29   0.43 
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    27   1.8  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   1.8  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    27   1.8  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    27   3.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.3  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   5.3  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   7.1  
SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   7.1  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    25   9.3  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 574 PAAGGCGSTRSGTSEMFSKIEGGQLF-PLTSWRKY 473
           P  GG G+ RSG +   +    G++F P  +WRK+
Sbjct: 77  PRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKW 111


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 574 PAAGGCGSTRSGTSEMFSKIEGGQLF-PLTSWRKY 473
           P  GG G+ RSG +   +    G++F P  +WRK+
Sbjct: 77  PRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKW 111


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 232 GVMGCGHRLLTNDECRLLLEVEDFFN 309
           G  G     +TND+ R++ E+E F+N
Sbjct: 353 GRKGVSINFVTNDDVRMMREIEQFYN 378


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 380 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 469
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 608 WAASHKRLEARTXCRGLW 555
           W A  KRL+ +T CR +W
Sbjct: 113 WVAREKRLDEKTTCRIMW 130


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 220 CESEGVMGCGHRLLTNDECRLLLEVEDFFNDDCD 321
           CESE   GCG R   N   R L  +  F + DCD
Sbjct: 96  CESEQNNGCGRR---NQLARRLAFLGSFGDGDCD 126


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 229 EGVMGCGHRLLTNDECRLLLEVEDFFNDDC 318
           E  + C      NDECR L +   FF+ +C
Sbjct: 523 ERCLVCLSNFELNDECRRLKQCNHFFHREC 552


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +1

Query: 10  FSCNFAITMGF*YLIVCTPACAFTHN-IKMLAKMAPS-QDKLVHLHKTPTSLDINPSGLL 183
           F C   I++ F   I    A A  H  I  L  + P  +D   H  K      I+P  LL
Sbjct: 310 FVCPSCISLDFDLQI---QAFARQHRVISTLGVVYPEREDSCFHKIKAAQWHQISPRSLL 366

Query: 184 FAFVELNHYNNE 219
           F F E NH +++
Sbjct: 367 FQFQEQNHIHHK 378


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 448 LDSQCKQENIFSNWLEEKVDPLRSSKTFLKFLNAW 552
           +D  CKQ+ +FS   E++ D L+S ++  +  N W
Sbjct: 242 IDQLCKQKEVFSAEKEKRSDHLKSIQS--EVSNLW 274


>SPBC3D6.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 121 DKLVHLHKTPTSLDINPSGLLFAFVELNH 207
           D + H  K  +S   NPS LLF    L H
Sbjct: 59  DGIPHSRKKVSSAHFNPSTLLFLLKRLGH 87


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +1

Query: 97  LAKMAPSQDKLVHLH----KTPTSLDINPSGLLFAFVELNHYNNECESE 231
           L +    ++KLV+L      T T LD +   ++ A V+ N Y N C+++
Sbjct: 170 LEEFESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNK 218


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 235 VMGCGHRLLTNDECRLLL 288
           V+ CGH +L N EC  LL
Sbjct: 299 VIFCGHGVLANPECPTLL 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,523
Number of Sequences: 5004
Number of extensions: 46792
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)