Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0875
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0373 - 13194723-13195847,13196219-13196809                       31   0.78 
04_04_0317 + 24341389-24341504,24341532-24341973                       29   3.2  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   4.2  
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24...    28   7.3  
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22...    28   7.3  
01_06_1469 - 37578597-37578700,37578893-37579019,37579177-375792...    28   7.3  

>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 432 VSEFGGTWFQLRR*WRVETRGVIDFDLRCSAR 337
           V+E G  + QL+R WR + RG++D D R   R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533


>04_04_0317 + 24341389-24341504,24341532-24341973
          Length = 185

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 244 CGHRLLTNDECRLLLEVEDFFNDDCDLLK 330
           C HR++  D+ R L    D F++DCD+ K
Sbjct: 150 CQHRMVARDDVRTLSGGHD-FHEDCDIAK 177


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 617  VLQWAASHKRLEARTXCRGLWVHAFRNFR 531
            +L+W ++  R EA++   GLW HA  +F+
Sbjct: 3198 LLEWNSTSVRHEAKSVLFGLWYHAKSSFK 3226


>12_01_0028 +
           242016-242467,242547-242918,243027-243182,245007-245089,
           245159-245222,245704-246001,246616-246726,247059-247100
          Length = 525

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 430 NDLLQQLDSQCKQENIFSNWLEEKVDPLRSSKTFL 534
           +D + ++++  +    +S WLE+ VDP R+S  F+
Sbjct: 285 HDEVPRIETYGRVFKTWSTWLEQNVDPARTSVFFM 319


>11_01_0029 +
           226459-226973,227053-227424,227533-227688,229513-229595,
           229665-229728,230209-230596
          Length = 525

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 430 NDLLQQLDSQCKQENIFSNWLEEKVDPLRSSKTFL 534
           +D + ++++  +    +S WLE+ VDP R+S  F+
Sbjct: 306 HDEVPRIETYGRVFKTWSTWLEQNVDPARTSVFFM 340


>01_06_1469 -
           37578597-37578700,37578893-37579019,37579177-37579274,
           37579373-37579540,37579872-37579981,37580072-37580124,
           37581131-37581250
          Length = 259

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 528 ISEVPERVDPQPPAAGSSFKSFVTRSPLKNCC 623
           +S+  E VDP+ PA      S  T S  K CC
Sbjct: 12  LSQAAEAVDPEDPAKSPPRPSSPTTSTRKACC 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,295,140
Number of Sequences: 37544
Number of extensions: 317774
Number of successful extensions: 764
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)