Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0875
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            30   1.4  
SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)                 29   2.4  
SB_26567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                28   5.7  
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061)               27   9.9  
SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 433 DLLQQLDSQCKQENIFSNWLEEKVDPLRSSKTFLKFLNAWTHNPRQ 570
           D+++ ++ Q    NI    LEE+ D LRSS T L  +NA  + PR+
Sbjct: 820 DVVKDMERQVMANNIRIQLLEEQNDKLRSSITLL--MNASANAPRK 863


>SB_16964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +1

Query: 433 DLLQQLDSQCKQENIFSNWLEEKVDPLRSSKTFLKFLNAWTHNPRQ 570
           D+++ ++ Q    NI    LEE+ D LRSS T L  +NA  + PR+
Sbjct: 15  DVVKDMERQVMANNIRIQLLEEQNDKLRSSITLL--MNASANAPRK 58


>SB_44019| Best HMM Match : TPR_2 (HMM E-Value=4.9e-12)
          Length = 654

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +1

Query: 58  CTPACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEGV 237
           CT  C  T   K L+K      K V   +  +S D+  + +L   ++ N + +E ES  +
Sbjct: 112 CTLPCGHTVCEKCLSKSQAK--KCVDCGEDYSSFDLRVNVILQDTLKKN-FASELESARL 168

Query: 238 MGCGHRLLTNDE 273
             CG+ LL NDE
Sbjct: 169 RICGNLLLNNDE 180


>SB_26567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = +2

Query: 209 TTMSASQKESWAAAIVCSLTMSAVCCSK-----LRISSMMIVICLKT 334
           +T +ASQ++S A  I+   TM    C+K     +++S+M   IC KT
Sbjct: 27  STHNASQRKSLATGIMQVSTMPFAICTKTAQHTMQVSTMPFAICNKT 73


>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 574 PAAGGCGSTRSGTSEMFSKIEGGQLF-PLTSWRKY 473
           P   G G+ RSG     +   GG++F P  +WRK+
Sbjct: 74  PRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKW 108


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 487 WLEEKVDPLRSSKTFLKFLNAWTHN 561
           WL+EK DP + +K ++  L  W+++
Sbjct: 371 WLKEKGDPSKFAKWYIPTLRTWSNS 395


>SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061)
          Length = 602

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 196 ELNHYNNEC---ESEGVMGCGHRLLTNDECRLLLEVEDFFNDDCDLL 327
           +LNH+   C   +S GVM    +  + DEC ++ E+     DD  L+
Sbjct: 248 KLNHFAAVCRNRKSGGVMAVEEKSSSEDECYVISEIAAVTLDDSQLV 294


>SB_1050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 79  THNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEGVMG 243
           T + K  A + PSQD        PT+  +   GL     +L+HYN+    E ++G
Sbjct: 34  TTSFKSRAIVIPSQD--TKTESGPTN--VRKQGLKDLLSQLSHYNSNIRQEALLG 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,769,488
Number of Sequences: 59808
Number of extensions: 368315
Number of successful extensions: 850
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)