Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0875
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    25   3.2  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    25   3.2  
AC024875-6|AAK29988.3|  193|Caenorhabditis elegans Rab family pr...    28   4.9  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    28   6.5  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 142 KTPTSLDINPSGLLFAFVELNHYNNEC 222
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 24.6 bits (51), Expect(2) = 3.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 284 CSKLRISSMMIVICLKTFRALQRRSKSITPR 376
           C  LRI  M +   LK F  +++  +  TPR
Sbjct: 559 CGTLRIQGMKMSKSLKNFITIRKALEDYTPR 589



 Score = 22.6 bits (46), Expect(2) = 3.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 251 IVCSLTMSAVCCSKLRI 301
           I CS+  SA+C SKL I
Sbjct: 508 IECSVMSSAICGSKLDI 524


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 24.6 bits (51), Expect(2) = 3.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 284 CSKLRISSMMIVICLKTFRALQRRSKSITPR 376
           C  LRI  M +   LK F  +++  +  TPR
Sbjct: 558 CGTLRIQGMKMSKSLKNFITIRKALEDYTPR 588



 Score = 22.6 bits (46), Expect(2) = 3.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 251 IVCSLTMSAVCCSKLRI 301
           I CS+  SA+C SKL I
Sbjct: 507 IECSVMSSAICGSKLDI 523


>AC024875-6|AAK29988.3|  193|Caenorhabditis elegans Rab family
           protein 18, isoform a protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 430 NDLLQQLDSQCKQENIFSNWLEEKVDPLRSSK 525
           N  +Q++D+ C  +NI    +  K+D +R S+
Sbjct: 76  NHWMQEVDTYCTNDNIIKMMVANKIDMVRKSR 107


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 299 ISSMMIVICLK-TFRALQRRSKSITPRVSTRHHRRS*NQ 412
           +SS++ VIC    F  ++   KSITP ++  H +R   Q
Sbjct: 186 LSSIVPVICYSWIFYTIRSAHKSITPNMAPEHQKRQGRQ 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,965,601
Number of Sequences: 27780
Number of extensions: 278639
Number of successful extensions: 830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)