Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0875
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    29   2.6  
At3g47080.1 68416.m05112 expressed protein                             28   6.1  

>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 617  VLQWAASHKRLEARTXCRGLWVHAFRNFR 531
            +L+W +S  R EA++   GLW H   +F+
Sbjct: 3208 LLEWNSSSVRTEAKSVIYGLWHHGRHSFK 3236


>At3g47080.1 68416.m05112 expressed protein
          Length = 515

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 348 CSARKVFKQITIIIEEILNFEQQTALIVSEQTMAAAHDS 232
           CS  + F  +  +IEE+ +F  QT + V +Q     H S
Sbjct: 217 CSINRAFSSMVFMIEELHSFALQTRVGVLKQVKKEMHAS 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,969,770
Number of Sequences: 28952
Number of extensions: 253163
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)