Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0874
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    32   0.059
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   9.0  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 442 RTLRYQIPYLERLQTPVDLVQYPAYLTK*RGNNYYFP 332
           R +R  +PYL  L++P  L  +  + T    NN YFP
Sbjct: 144 RKIRVMLPYLHSLRSPTSLKNFSRFDTHDSTNNPYFP 180


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 110 IADIERSAAVSTLGSPPPSQP*ATDRACR 24
           + +  RSA  S +  PPP QP A+ +A R
Sbjct: 172 LLEFARSAEGSIIAPPPPLQPGASRQARR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,223
Number of Sequences: 5004
Number of extensions: 46757
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)