Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0874
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)                  31   0.77 
SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36)                   27   9.4  

>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
          Length = 336

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 369 YAGYCTRSTGVCNLSRYGIWYLRVLVF---SGMC 461
           YAG CT S GVC LS  G+  L V VF   +G+C
Sbjct: 126 YAGVCTLSAGVCTLSA-GVCTLSVGVFTLSAGVC 158



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 369 YAGYCTRSTGVCNLSRYGIWYLRVLVF---SGMC 461
           Y G CT S GVC LS  G+  L V VF   +G+C
Sbjct: 7   YTGVCTLSAGVCTLSG-GVCTLSVGVFTLSAGIC 39


>SB_46132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 344 LLLPVTY*GTRSFSYHLFRQH 282
           L+  VTY   R FSYHLF+ H
Sbjct: 599 LICGVTYKSWRPFSYHLFQAH 619


>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 733

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 334 GSSNYCLVIWLDTLDTAPGPLESVISLDMVFGT*EFLFFLVCAL 465
           G + YC+V W    D        V+ L ++FG   F + LVC L
Sbjct: 178 GLARYCVVSWEPAFDHFKSMTIQVVLLVVIFGI--FPWILVCVL 219


>SB_21640| Best HMM Match : fn3 (HMM E-Value=2.3e-36)
          Length = 399

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 331 TGSSNYCLVIWLDTLDTAPGPLESVISLDMVF 426
           TGSS  C + W   + T P P  +VI  ++ +
Sbjct: 118 TGSSRECFIQWSPVVSTDPDPDAAVIGYNIYY 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,898,231
Number of Sequences: 59808
Number of extensions: 341439
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)