Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0873
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.35 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 187 YSTRPGVDTANVLNQSSKKRPQSKD*KD*R---NISSCRCYKG 306
           Y   P VD   +L ++  K  Q+ D KD     N++ CRC KG
Sbjct: 574 YDILPEVDVEEILGEA--KVLQNFDIKDKNKKVNVAGCRCVKG 614


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 372 SPLLKYFRVGYPLTPNLDAKSGSFVASTAANIP 274
           SP+     VG P  PN+ A+ G  +A      P
Sbjct: 37  SPMELNALVGTPAAPNMPAEEGEGMAGVTGEEP 69


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 80  FLFRLSYGISHKLDYGLPFVFTIIWK 3
           +LF L+      L  GLPF  ++ W+
Sbjct: 71  YLFNLAVSDLLFLILGLPFELSVFWQ 96


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 411 WSSCRACPASNLNSPLLKYFR 349
           WSS ++ P  ++ S LL+Y R
Sbjct: 370 WSSQKSEPRRSIYSSLLRYPR 390


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,251
Number of Sequences: 438
Number of extensions: 2624
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)