Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0872
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 169 3e-43
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 124 9e-30
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 76 6e-15
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 72 7e-14
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 38 0.002
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 36 0.004
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 36 0.008
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 35 0.010
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 34 0.017
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 33 0.053
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 32 0.070
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 31 0.16
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 30 0.37
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 1.5
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 27 2.6
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 27 2.6
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.6
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 4.6
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 26 4.6
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 26 6.1
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 26 6.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 6.1
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 8.0
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 8.0
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 169 bits (412), Expect = 3e-43
Identities = 78/87 (89%), Positives = 82/87 (94%)
Frame = +1
Query: 247 FYWWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 426
F WDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+LL
Sbjct: 63 FTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLL 122
Query: 427 IFANKQDLPNAMNAAEITDKLGLHSLR 507
+FANKQDLPNAMNAAEITDKLGLHSLR
Sbjct: 123 VFANKQDLPNAMNAAEITDKLGLHSLR 149
Score = 115 bits (276), Expect = 8e-27
Identities = 55/64 (85%), Positives = 59/64 (92%)
Frame = +2
Query: 62 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 241
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 242 ISFT 253
ISFT
Sbjct: 61 ISFT 64
Score = 64.9 bits (151), Expect = 1e-11
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 507 HRNWYIQATCATSGDGLYEGLDWLSNQLKN 596
HR WYIQATCATSGDGLYEGL+WLS LKN
Sbjct: 150 HRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 124 bits (300), Expect = 9e-30
Identities = 57/87 (65%), Positives = 69/87 (79%)
Frame = +1
Query: 247 FYWWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 426
F WDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL
Sbjct: 67 FNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLL 126
Query: 427 IFANKQDLPNAMNAAEITDKLGLHSLR 507
+ ANKQDLP A++ A+ITD L L L+
Sbjct: 127 VLANKQDLPGALSPAQITDVLQLDKLK 153
Score = 93.1 bits (221), Expect = 4e-20
Identities = 44/59 (74%), Positives = 48/59 (81%)
Frame = +2
Query: 74 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 250
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKF 67
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = +3
Query: 510 RNWYIQATCATSGDGLYEGLDWLSNQLK 593
R W +Q TCA +GDGL EGL WLS K
Sbjct: 155 RLWNVQPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 75.8 bits (178), Expect = 6e-15
Identities = 33/88 (37%), Positives = 56/88 (63%)
Frame = +1
Query: 247 FYWWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 426
F WD+GGQ +R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L
Sbjct: 62 FTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSIL 121
Query: 427 IFANKQDLPNAMNAAEITDKLGLHSLRT 510
+ ANK D+ A+++ EI+ L + ++
Sbjct: 122 VLANKSDVSGALSSEEISKILNISKYKS 149
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +2
Query: 104 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFT 253
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFT 63
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 72.1 bits (169), Expect = 7e-14
Identities = 37/94 (39%), Positives = 54/94 (57%)
Frame = +1
Query: 247 FYWWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLL 426
F +D+GG + R LWR YF G++++VD D ER+ E++ EL +L+ +EL L
Sbjct: 66 FTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFL 125
Query: 427 IFANKQDLPNAMNAAEITDKLGLHSLRTVTGTSK 528
I NK D P A++ E+ LGL+ T G SK
Sbjct: 126 ILGNKIDAPGAISEDELKAALGLYQ-TTGKGVSK 158
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 107 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 253
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFT 67
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFA 435
WD GQ++ R + Y++ G+I V D D++ ++ L + + L+
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVG 120
Query: 436 NKQDL 450
NK D+
Sbjct: 121 NKSDM 125
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Frame = +1
Query: 232 IQKH*FYWWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSNDRERIGEAREEL 381
+ +H + ++DVGGQ R W H F+N L+F +V+ N ++ EA
Sbjct: 231 LNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDNSGNQMQEALLLW 290
Query: 382 MRMLSEDELRDAVLLIFANKQDL 450
+ + ++ +++F NK DL
Sbjct: 291 DSICNSSWFSESAMILFLNKLDL 313
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 101 GKKEMRILMVGLDAAGKTTILYKLKL 178
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFA 435
WD GQ+K R + R+Y++ G + V D +++ E L + + V+L
Sbjct: 67 WDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLA-G 125
Query: 436 NKQDLPN 456
+K DL N
Sbjct: 126 SKSDLQN 132
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEAREELMRMLSEDELRDAVL 423
+DVGGQ R W + F+N +IF V ND ++ A E R++ L D+++
Sbjct: 197 FDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLFDSII 254
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 34.3 bits (75), Expect = 0.017
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFA 435
WD GQ++ + L Y++N I V D + +A+ ++ L V+ +
Sbjct: 69 WDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAG 127
Query: 436 NKQDLPNAMNAAEITD 483
NK DL A E D
Sbjct: 128 NKLDLAQERRAVEKAD 143
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 32.7 bits (71), Expect = 0.053
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFA 435
WD GQ++ R + Y++ G + V D + L + L E + V+++
Sbjct: 64 WDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVG 122
Query: 436 NKQDL 450
NK DL
Sbjct: 123 NKTDL 127
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 32.3 bits (70), Expect = 0.070
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 372
WD GQ++ R + Y++ G++ + D D++ R
Sbjct: 63 WDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFA 435
WD GQ++ R L Y +++ I V D + E+ + + + D ++++
Sbjct: 65 WDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVG 123
Query: 436 NKQDL 450
NK DL
Sbjct: 124 NKTDL 128
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 29.9 bits (64), Expect = 0.37
Identities = 22/93 (23%), Positives = 41/93 (44%)
Frame = +1
Query: 364 EAREELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRTVTGTSKRHAPL 543
+ +E+L LSE +LRD+ + ++ P N+ +D LG A
Sbjct: 16 QCKEDLKVSLSESDLRDSQGQL--GIENPPKCNNSGNHSDNLGFIEQSETVHPENEKALT 73
Query: 544 PETDCTRVSTGSPISSRTPTANRMCANSQTNLI 642
P+ T++ T PI+ TP + + ++ L+
Sbjct: 74 PDLRDTKIHTSLPIT--TPFSKKRAREAKNILL 104
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVLL 426
WD GQ++ + L +++ + V D N+ E + R+E + S +
Sbjct: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFI 121
Query: 427 IFANKQDL 450
+ NK D+
Sbjct: 122 LLGNKVDV 129
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -1
Query: 228 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 49
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 48 EYNF 37
+ F
Sbjct: 248 IHVF 251
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 104 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 235
KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 256 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 405
WD GQ++ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 62 WDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 119 ILMVGLDAAGKTTILYKLKL 178
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 107 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 208
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 83 LFKGLFGKKEMRILMVGLDAAGKTTI 160
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 370 REELMRMLSEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRTVTGTSKRHAPLPE 549
REE++R E +LRD + Q + N+M +T + H+ + + T++
Sbjct: 340 REEILRRELEKQLRDMDARYQRHMQTVVNSMQKMRVTSPVD-HNEQPESSTAEMF----- 393
Query: 550 TDCTRVSTGSPI 585
DCT ++ SP+
Sbjct: 394 VDCTIEASQSPL 405
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.8 bits (54), Expect = 6.1
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -1
Query: 270 ASNIPPVKLMF-LYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKR 94
A+ + P KL ++ ++T+KPI+ P L L + I +L SF+
Sbjct: 910 AAILKPTKLTHGMFDALNTMKPIISDFTVFEPALHTVENFDLTDCADEQILLLSSFVNFV 969
Query: 93 PLNKFANIFPILNYYEYNFQK 31
PL + +LN E QK
Sbjct: 970 PLFRKVIWNLLLNNKEALIQK 990
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 557 QSVSGSGACRLDVPVTVRSEC 495
Q VSG GA R+ +T RS+C
Sbjct: 222 QPVSGLGAARMSALLTYRSKC 242
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 6.1
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +1
Query: 346 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRTV 513
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S T
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 514 TGTSKRHAPLPETDCTRVSTGSPISSRTPTANRMCANSQTN 636
+ A + R S SR ++ +S+ N
Sbjct: 465 NNNTPSKAKVKAESKVR-SKAKSDKSRAKLSSDTNKDSEKN 504
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 65 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 208
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 565 PSYSPSPEVAHVAWMYQL 512
P+ SP PEV+H W+ L
Sbjct: 16 PNSSPDPEVSHKLWVSSL 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,968
Number of Sequences: 5004
Number of extensions: 65399
Number of successful extensions: 230
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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