Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0871
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              40   0.001
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               38   0.008
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              36   0.023
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    34   0.093
SB_8818| Best HMM Match : I-set (HMM E-Value=0)                        31   0.65 
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           31   1.1  
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                30   2.0  
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 29   2.6  
SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)        29   4.6  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   4.6  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     28   6.1  

>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/90 (26%), Positives = 44/90 (48%)
 Frame = +3

Query: 198 KHNSPVRIDSIKYNTQETLAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL 377
           + +SP  +  + +   E + E+ +      + N+G +GHVD GKT+L  A++   S    
Sbjct: 11  RKDSPQTLSIVSFKMAEKIKERIL------NFNIGVLGHVDSGKTSLAKALSTTAST--- 61

Query: 378 AQKKGYADIDNAPEEKARGITINVAHVEYQ 467
                 A  D  P+ + RGIT+++    +Q
Sbjct: 62  ------ASFDKNPQSQERGITLDLGFSSFQ 85


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 294  NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV-AHVEYQT 470
            N   + HVDHGK+TL   + +V   ++ +       +D    E+ RGIT+    HV++  
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV-LDKLQVERERGITVKAQGHVDFSY 2001

Query: 471  E 473
            E
Sbjct: 2002 E 2002


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = +2

Query: 449 GSCRIPNRTEALWTH*LPRSADYIKNMITGTAQMDGAILVVAATDG 586
           G  R   + + +     P   D+I NMITG AQ D AILVV A  G
Sbjct: 4   GLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITG 49


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 294 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 443
           N+  I HVDHGK+TLT ++      +  A+       D   +E+ R ITI
Sbjct: 20  NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITI 69


>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2787

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +3

Query: 156  CEISSEAKPVCKCTKHNSPVRIDS 227
            C++S+EAKP  + +++ SPVR+D+
Sbjct: 1953 CKLSAEAKPTFEWSRNGSPVRLDN 1976


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 402 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPG 506
           +D   EE+ +G T+ V    + T+ +H+   D PG
Sbjct: 197 LDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPG 231


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 276 RTKPHCNVGTI-GHVDHGKTTLTAAI 350
           R  P   V TI GHVDHGKTTL  A+
Sbjct: 23  RLMPRPPVVTIMGHVDHGKTTLLDAL 48


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 276 RTKPHCNVGTIGHVDHGKTTLT 341
           + K H N+  IGHVD GK+T T
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTT 24


>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 228  IKYNTQETLAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVL 362
            ++Y     L  K I    +P   +G +G    GK+TLT A+ ++L
Sbjct: 1339 LRYRANLPLVLKNISVDIQPGEKIGIVGRTGAGKSTLTLALFRIL 1383


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 500 PRSADYIKNMITGTAQM 550
           P   D+IKNMITGT+QM
Sbjct: 45  PGHRDFIKNMITGTSQM 61


>SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 351 TKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 473
           T +L D +  +K  Y  +D++  EKA GI ++ +H E  T+
Sbjct: 97  TYILLDDSHGEKTAYILLDDSHAEKATGILLDDSHAEKATD 137


>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 234 YNTQETLAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNA 413
           YN+Q   A+ Q+ E    H N+ ++      + +   +I K L DL    KK  AD++ A
Sbjct: 287 YNSQHKNAQTQLREA---HANLESVIQKQTQRKSEIKSIEKELPDLKNNLKKAEADLEKA 343

Query: 414 PEEKAR 431
            + +A+
Sbjct: 344 VQGEAK 349


>SB_51818| Best HMM Match : Cu2_monooxygen (HMM E-Value=2.8e-14)
          Length = 239

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = +3

Query: 285 PHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPE-EKARGITINVAH-- 455
           PH N G +G V +G     +A  K+L          YA   NAP  +   G+   V    
Sbjct: 130 PHWNCGEMGDVQNGVCAQGSA-KKIL----------YAWAGNAPSLDLPEGVAFKVGQDS 178

Query: 456 -VEYQTEQRHYGHTD 497
            V+Y   Q HYGH D
Sbjct: 179 DVKYLVLQVHYGHVD 193


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
 Frame = +3

Query: 303 TIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYAD 401
           TIGHV HGK+T+  A++ V +       + N+  K GYA+
Sbjct: 27  TIGHVAHGKSTVVKALSGVQTVRFKNELERNITIKLGYAN 66


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +3

Query: 300 GTIGHVDHGKTTLT-------AAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHV 458
           G I H D GKTTLT        AI +  +  +   KKG A  D    E+ RGI++  + +
Sbjct: 14  GIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKG-ATSDFMEIERQRGISVATSVL 72

Query: 459 EYQTEQRHYGHTDCPG 506
            +    +     D PG
Sbjct: 73  AFNYRDKKINILDTPG 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,985,907
Number of Sequences: 59808
Number of extensions: 389778
Number of successful extensions: 875
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)