Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0869
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.16 |iws1||transcription elongation factor complex subun...    31   0.24 
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    28   1.3  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    28   1.7  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   2.9  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    27   2.9  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   5.1  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.7  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   6.7  
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    25   8.9  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   8.9  

>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
 Frame = +3

Query: 291 TIEGALEAIDVTELASIITSNK---VRFSNAPLVWLKE--VANFLNSKIPIEVEDPTFTI 455
           TI+  ++  DVT        NK   + FS   L  L E    NF  SKI  E E+PT   
Sbjct: 26  TIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSDLDENQFENFDESKIGREAEEPTIYN 85

Query: 456 YPATYPLSETPDELKRTLQVFFKMLERQ 539
            P T+   + P+ ++  L+V  K+ + Q
Sbjct: 86  LP-TFKKKQEPNTIEENLEVPRKVRKEQ 112


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 442 GSSTSIGILLFKKFATSLSQTKGAFEKRTLFDVMIL 335
           G +TS GILL+  +A+ + ++    EK ++FD  ++
Sbjct: 80  GLATSSGILLYSSWASVMQESFHFLEKISMFDTFLV 115


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 599 DLYSSHWQEL*ECHQRITAHLPFQHLEE 516
           DLY   W  L   HQ  +AH P  +L E
Sbjct: 209 DLYRDEWFNLLTVHQNHSAHTPTSYLPE 236


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 94  KNKKSQNGKLKSKEDEKKALKNGPKLED 177
           K KK Q+G  + KE  +K LKN  K+ +
Sbjct: 7   KRKKHQSGNEEVKEKRQKPLKNDKKIAE 34


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 318 DVTELASIITSNKVRFSNAPLVWLKEVA 401
           DV  +  + TSNKV F  AP VW+   A
Sbjct: 43  DVLLVWDLHTSNKVAFFEAPSVWIMTCA 70


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 19  IYKSNFNFLSNT-LLKMSSGQWEVVGKNKKSQNGKLKSKEDEKKALK 156
           + +S+F F S+T LL +S G+W    +  +    +L    D  KALK
Sbjct: 426 LVRSHFIFKSDTGLLTISGGKWTTYREMAEETVNELIKDHDFGKALK 472


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +3

Query: 372 APLVWLKEVANFLNSKIPIEVEDPTFTIYPATYPLSETPDELKRTLQVFFKMLE 533
           AP   LK V N  +  I    ED + T  P+T P +E P     +  VFFK  E
Sbjct: 227 APSGSLKAVEN--SDVIESSAEDSSNTDNPSTKPSNEMPISPLLSSSVFFKDTE 278


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/82 (23%), Positives = 38/82 (46%)
 Frame = -3

Query: 535  LSSILKNT*SVLFSSSGVSDRGYVAG*IVKVGSSTSIGILLFKKFATSLSQTKGAFEKRT 356
            L+S   N+ S+  SSSGV      +  + K+GSS+    L       +   T       +
Sbjct: 3745 LASTFDNSQSIFSSSSGVPGLSTKSSSLGKIGSSSISLTLSSSSIRDAELPTPSRMTSPS 3804

Query: 355  LFDVMILASSVTSMASRAPSMV 290
            L + +  +SS++  ++  P+++
Sbjct: 3805 LSETIPQSSSISEASTSNPNIL 3826


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 205  FFRHQHPFRRPQV*VHFSKLFSHPPWILTFRSETS---YFYLRLPID 74
            FF+  H F    V  +   L SH P I +  SE S     Y+R  +D
Sbjct: 964  FFQKTHDFTMEYVATYLIHLLSHHPDISSIESENSLDFIAYIRFYVD 1010


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 82  EVVGKNKKSQNGKLKSKEDEKKALKNGPKLED 177
           E  G NKK      K +++E+K  +NG  L D
Sbjct: 295 EASGFNKKQSKELEKYRQEEEKRKENGDDLSD 326


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 372 APLVWLKEVANFLNSKIPIEVEDPTFTIYPATYPLSE 482
           +PL   KEV   L + +P+   + T   +   YP +E
Sbjct: 39  SPLALSKEVTEALKNNVPVVALESTIITHGMPYPQNE 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,300
Number of Sequences: 5004
Number of extensions: 49042
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)