Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0869
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.5  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 29  VTLIFSRILCSK-CLAVNGKS*VKIRSLRTES*NP 130
           VT +  R    K CL V+G +  K+RS+  +S NP
Sbjct: 337 VTALIQRGTLKKGCLLVSGIASAKVRSMFNDSGNP 371


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 732 SRDIPIGVDSVRVLNFHTSGGMQYKTRGYP 643
           S+ + +  D   + NF TS G+ ++  G P
Sbjct: 31  SQQLEVNFDGNYINNFETSNGISHQESGQP 60


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -1

Query: 612 PWACRPLLKSLARAVRVPSKNNCTFAFPAS*RTLEVFSSAHLVF 481
           PWA  P++    R V      +C+F +      + +F +    F
Sbjct: 175 PWALMPVMGVWGRFVPEGFLTSCSFDYLTDTNEIRIFVATIFTF 218


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 598 STCPWSQITASDASSRITP 654
           ST   S +TA++ASS I P
Sbjct: 923 STTKSSAVTATNASSMIAP 941


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,063
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)