Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0869
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil...    29   4.4  
At3g28820.1 68416.m03596 expressed protein  ; expression support...    28   7.7  
At3g28810.1 68416.m03595 hypothetical protein                          28   7.7  
At1g11905.1 68414.m01373 expressed protein                             28   7.7  

>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
           protein contains Pfam profile: PF04981 NMD3 family
          Length = 516

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 351 NKVRFSNAPLVWLKEVANFLNSKIPIEVEDPTFTIYPATYPLSET 485
           NKV+  NA  VW +  +  +  K+ ++ E     +   +YP+  T
Sbjct: 94  NKVKLKNAEFVWTEPHSKRIKVKLTVQAEVLNGAVLEQSYPVEYT 138


>At3g28820.1 68416.m03596 expressed protein  ; expression supported
           by MPSS
          Length = 434

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 43  LSNTLLKMSSGQWEVVGKNKKSQNGKLKSKEDEKKA 150
           +S+T    SS +   VGK   S+N K   KE E  A
Sbjct: 185 VSSTTNSASSNEESSVGKEASSENSKSSGKESESSA 220


>At3g28810.1 68416.m03595 hypothetical protein 
          Length = 434

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 43  LSNTLLKMSSGQWEVVGKNKKSQNGKLKSKEDEKKA 150
           +S+T    SS +   VGK   S+N K   KE E  A
Sbjct: 185 VSSTTNSASSNEESSVGKEASSENSKSSGKESESSA 220


>At1g11905.1 68414.m01373 expressed protein
          Length = 228

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 500 LQLIWCFR*RVCCRIDCKSWIFNF 429
           L L  C R   CC  +C  WI NF
Sbjct: 189 LSLTGCLRKTRCCETNCTLWIRNF 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,068,100
Number of Sequences: 28952
Number of extensions: 256195
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)