Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0868
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   3.3  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   4.4  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    26   4.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   7.6  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   7.6  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 235 YDRLIKNIAFYDIGNNDIPHKTTTFN 158
           + R   NI  Y I NND PH    FN
Sbjct: 600 FRRFTMNIGTYIICNNDCPHMVYGFN 625


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 370 AGPIWLILVLNYLWKSREGS 429
           +GPIW +   N  W+SRE S
Sbjct: 917 SGPIWQLKKENNYWESRENS 936


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 188 VITNVVESNIFNKAVIWHSAGT 253
           +I N++E +  N  ++W SAGT
Sbjct: 110 IIRNLIEQDRCNSMILWGSAGT 131


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 394 PKLAKSVQPFSSFSETNEQQFIF 326
           P+L +S++P+ S  + + Q+FIF
Sbjct: 920 PQLVRSLKPYISVLKQDHQEFIF 942


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 229 RLIKNIAFYDIGNNDIPHKTTTFN*YFGELDMLERL 122
           +++   A Y I N   P K T    Y  + D++ERL
Sbjct: 840 QMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERL 875


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,108
Number of Sequences: 5004
Number of extensions: 52889
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)