Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0868
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44455| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_18800| Best HMM Match : Cytomega_UL20A (HMM E-Value=7.7)            28   8.0  

>SB_44455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = -3

Query: 352 ETNEQQFIFI*YSQNRLLRPRLEQHTGYNNLEQGPG*MPYDRLIKNIAFYDIGNNDIP 179
           E NE+    +      L+RPRL    GYNN       + Y  L++NI    I   D P
Sbjct: 396 EYNEKALFKVGRGNRVLMRPRLAAGIGYNNRRLSDPGLFYPTLLENIVIRGILPPDYP 453


>SB_18800| Best HMM Match : Cytomega_UL20A (HMM E-Value=7.7)
          Length = 140

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 413 SPEKVQKVDKYENARNLIKMTIFFLP*CVPRRRISFVCFRV-ILYQSLGLLFIDWGHYKV 589
           S +KV K+D+ E  RN  KM   FL    PR   +    R   + +++ +  ++W  ++V
Sbjct: 54  SKKKVDKLDEMEKLRNSEKMMDAFLASTAPRTHETDKSERTKTIIKTIRVSDVNWIDWQV 113

Query: 590 CRVN 601
             VN
Sbjct: 114 SDVN 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,673,415
Number of Sequences: 59808
Number of extensions: 353749
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)