Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0868
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-8|CAA99788.2|  350|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL117207-5|CAB60395.1|  375|Caenorhabditis elegans Hypothetical ...    29   4.0  

>Z75529-8|CAA99788.2|  350|Caenorhabditis elegans Hypothetical
           protein C44H9.8 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 512 ISFVCFRVILYQSLGLLFIDWGHYKVCRVN*YNIKKD 622
           I  V  R + Y++     +D+ H+ V RVN Y+ +KD
Sbjct: 22  IGKVIMRSLAYETCDKASLDFNHHSVVRVNCYDQQKD 58


>AL117207-5|CAB60395.1|  375|Caenorhabditis elegans Hypothetical
           protein Y60A3A.7 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 451 CSEFNKNDNFFSPLMCPPSAD 513
           C   N  D++FSP+ C P+AD
Sbjct: 307 CVTLNSYDDYFSPIECIPTAD 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,329,831
Number of Sequences: 27780
Number of extensions: 290137
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)