Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0868
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    25   0.88 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.0  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = -2

Query: 515 KSADGGH--IKGEKKLSFLLNSEHFHIYR 435
           K A  GH  ++G++K S  LNSE+F I++
Sbjct: 28  KRAPTGHQEMQGKEKNSASLNSENFGIFK 56


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 79  QMWIPIQIVYNTAEPVVLTYLILRNI 156
           ++W P  I+YN A+P   + +I  N+
Sbjct: 86  RVWRPDTILYNNADPQYSSAVINTNV 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,836
Number of Sequences: 438
Number of extensions: 3782
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)