Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0867
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 106 3e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 3e-10
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 45 9e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 44 2e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 44 3e-05
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 41 2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 37 0.002
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 35 0.013
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 35 0.013
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 34 0.017
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 34 0.023
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.040
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 33 0.053
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 31 0.12
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 29 0.50
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.50
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 29 0.66
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 29 0.66
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 28 1.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.1
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.1
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 2.6
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 3.5
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 27 3.5
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.5
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 26 4.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 4.6
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 6.1
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 6.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 106 bits (255), Expect = 3e-24
Identities = 55/141 (39%), Positives = 74/141 (52%)
Frame = +2
Query: 254 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT*TTNRLFGEVMVRL 613
K +G++ PTPIQ Q WP+AMSG++++ K + L +
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 614 LWSLAPTRELAQPXSASCCRF 676
+ LAPTRELA C +F
Sbjct: 198 VLVLAPTRELAVQIQQECTKF 218
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.1 bits (139), Expect = 3e-10
Identities = 28/70 (40%), Positives = 43/70 (61%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVSTTXFRKLLQIL 678
++ IGV KTGSGKT+A++LP HI Q P++ G+GPIA++ + ++ FR+ L
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL 515
Query: 679 DTHLMVRNTC 708
L +R C
Sbjct: 516 KL-LNIRACC 524
Score = 49.6 bits (113), Expect = 4e-07
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
+ F K+FY + SP EV+E R + + + + G++ P+ + + +
Sbjct: 375 EDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVIN 434
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLLAYPK 523
++GY++PT IQAQ P SG++++ K
Sbjct: 435 SLGYEKPTSIQAQAIPAITSGRDVIGVAK 463
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 45.2 bits (102), Expect = 9e-06
Identities = 17/59 (28%), Positives = 37/59 (62%)
Frame = +2
Query: 335 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLI 290
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGD---GPIALV 621
K+ IG+ +TGSGKT A+I+P I+ I+ PP+ + GP A+V
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVV 330
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 44.0 bits (99), Expect = 2e-05
Identities = 29/89 (32%), Positives = 45/89 (50%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQ 559
PI F+E + +++G+K YKEPTPIQA WP ++G++++ + K
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 560 PLCT*TTNRLFGEVMVRLLWSLAPTRELA 646
L N L V + ++PTRELA
Sbjct: 223 ALQ--YLNGLSDNKSVPRVLVVSPTRELA 249
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 350 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLA 514
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 41.1 bits (92), Expect = 2e-04
Identities = 29/99 (29%), Positives = 45/99 (45%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
FE+ + G+ G++ P+PIQ + PIA+SG+++LA K K L
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELAQPXSASCCRFWTHI 688
T + + ++ L PTRELA S C H+
Sbjct: 106 VDTKKSKIQTLI-----LVPTRELALQTSQVCKTLGKHM 139
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPPIRRGDGPIALVFGAYQRVSTTXFRKLLQIL 678
++ +G KTGSGKTLA+I+P I ++ + DG ALV + ++ F L++I
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENL-YRKKWTSLDGLGALVISPTRELAIQTFETLVKIG 135
Query: 679 DTH 687
H
Sbjct: 136 RLH 138
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 34.7 bits (76), Expect = 0.013
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Frame = +2
Query: 362 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKR 541
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+L+A R + +
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA-QARTGSGK 64
Query: 542 WPTSCQPLCT*TTNRLFGEVMVRLLWS--LAPTRELAQ 649
P+ + + R +++ L PTRELAQ
Sbjct: 65 TAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQ 102
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 34.7 bits (76), Expect = 0.013
Identities = 25/85 (29%), Positives = 38/85 (44%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
F+ N +++ V G+K+ TP+QA P+ + K+L+ K P
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTL-AYLLPCFD 61
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELA 646
T R E + L +APTRELA
Sbjct: 62 KVTRRDTDETGLGAL-IVAPTRELA 85
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 34.3 bits (75), Expect = 0.017
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 326 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 506 LLA 514
++A
Sbjct: 61 VIA 63
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 33.9 bits (74), Expect = 0.023
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHI 573
++ +G+ +TGSGKT A+++P I H+
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHL 131
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ + + + G+K PTPIQ + P+ + G++++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVV 110
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.1 bits (72), Expect = 0.040
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAI 564
++ +G KTGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 32.7 bits (71), Expect = 0.053
Identities = 24/89 (26%), Positives = 41/89 (46%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQPLCT 571
F+E D + + + +G+K PTPIQ + P+ ++ ++++ + K T+ L
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGK---TAAFALP- 103
Query: 572 *TTNRLFGEVMVRLLWSLAPTRELAQPXS 658
L+ LAPTRELA S
Sbjct: 104 -VIQELWNNPSPFFAVVLAPTRELAYQIS 131
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLL 511
F+ N + +G+ +G++ PT IQ + P+A+ GK+++
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIV 300
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQP 585
K+ +G TGSGKT A+I+P + + +P
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP 325
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 29.5 bits (63), Expect = 0.50
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLLAYPKRVPAKRWPTSCQP 562
I F++ N + +G+ G++ P+ IQ + + +++LA + K S
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 563 LCT*TTNRLFGEVMVRLLWSLAPTRELAQ 649
L T+ + ++ LAPTRELAQ
Sbjct: 78 LQKIDTSLKQCQALI-----LAPTRELAQ 101
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 520 KTGSGKTLAYILPAIVHINXQP 585
+TGSGKTLAY+LP + + P
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLP 207
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 29.1 bits (62), Expect = 0.66
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 502 EFIGVPKTGSGKTLAYILPAIVH 570
+ IG TGSGKTLA+ +P + H
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEH 183
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 29.1 bits (62), Expect = 0.66
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 508 IGVPKTGSGKTLAYILPAIVHINXQP 585
IG KTGSGKT A+ LP I + P
Sbjct: 48 IGGAKTGSGKTAAFALPIIEKWSKDP 73
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 499 KEFIGVPKTGSGKTLAYILPAIVHINXQPP 588
++ + TGSGKT+AY+ P + + P
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 508 IGVPKTGSGKTLAYILPAIVHINXQPP 588
I V TG GK+L++++PA++ Q P
Sbjct: 1210 ITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 508 IGVPKTGSGKTLAYILPAIVHINXQPP 588
I V TG GK+L++++PA++ Q P
Sbjct: 1210 ITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1
Query: 523 TGSGKTLAYILPAI 564
TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 436 DNGLQRTDAHSSSRLADSYVWKEFIGVPKTGSGK 537
D ++ ++ S+ ADS ++++F G PKT +G+
Sbjct: 201 DENMEDSEDESNGPQADSIMYEDFFG-PKTAAGR 233
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 692 IRCVSKICSNLRXLVVLTLW 633
+RC S +C++ R ++ TLW
Sbjct: 20 LRCKSTVCTSWRNFIIPTLW 39
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.5
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -1
Query: 233 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 87
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 86 IPVT 75
PV+
Sbjct: 198 APVS 201
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +2
Query: 221 SEHASPRLGFCSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 382
++ A R+G +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 383 IQYFEEANFPDYVQQGVKT 439
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 505 FIGVPKTGSGKTLAYILPAIV 567
FI +P TG GK+L Y LPA++
Sbjct: 538 FILMP-TGGGKSLCYQLPAVI 557
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 248 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 105
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -3
Query: 180 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 22
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 89 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 9
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 443 PLSLHLVAHNQENL--LLQSIE 384
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,634
Number of Sequences: 5004
Number of extensions: 61014
Number of successful extensions: 215
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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